View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_8 (Length: 500)
Name: NF3097_low_8
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 47035859 - 47036343
Alignment:
| Q |
1 |
ataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcagacactcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47035859 |
ataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcagacactcgc |
47035958 |
T |
|
| Q |
101 |
ggagaacatgtaaaattgattcaatttcattaccacaaaaattgcagcacgaatcacctaattgattacgcgactttttcaaatcaatgaacagtcttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47035959 |
ggagaacatgtaaaattgattcaatttcattaccacaaaaattgcagcacgaatcacctaattgattacacgactttttcaaatcaatgaacagtcttcc |
47036058 |
T |
|
| Q |
201 |
atgacaaactagccaaataaagtatctaacacgctctggagcatgaattctccaaacattggaccaaaagctattagcctccatgttattaaacctgcaa |
300 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036059 |
atgacaaactagccaaataaagcatctaacacgctctggagcatgaattctccaaacattggaccaaaagctattagcctccatgttattaaacctgcaa |
47036158 |
T |
|
| Q |
301 |
agggacttgtaacttgtaagtggtagcgacaatatcccagggtaacacacaaatcagctcttaaattgatatcagattgcactaggctccttatgtcaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47036159 |
agggacttgtaacttgtaagtggtagcgacaatatcccagggtaacacacaaatcagctcctaaattgatatcagattgcactaggctccttatgtcaag |
47036258 |
T |
|
| Q |
401 |
gactatatcatctaacaagtggctatttatttaatagagataaattccattgctcattactatctattaagtcttctactttcat |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036259 |
gactatatcatctaacaagtggctatttatttaatagagataaattccattgctcattactatctattaagtcttctactttcat |
47036343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 44495523 - 44495644
Alignment:
| Q |
17 |
cttaaaatcacatttcaaagaaagcttcacgatctttccacggagccaaatgcatctatatcgccctagctagcagacactcgcggagaacatgtaaaat |
116 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| || | | | ||| |||||| |||||| ||||| |||| |||||||| ||||| |||||||||| |
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| T |
44495523 |
cttaaaatcac-tttcaaagaaaacttcacgatcctttcctgaaaccagatgcattcatatcgtcctagttagcggacactcgtggagagcatgtaaaat |
44495621 |
T |
|
| Q |
117 |
tgattcaatttcattaccacaaa |
139 |
Q |
| |
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||||| |||||| |||||||||| |
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| T |
44495622 |
tgattaaatttcgttaccacaaa |
44495644 |
T |
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