View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_83 (Length: 245)
Name: NF3097_low_83
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 45041573 - 45041727
Alignment:
| Q |
1 |
attcaatacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttccaactttaacacaactttctgtcatggaaaaat |
100 |
Q |
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| T |
45041573 |
attcaatacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttccaactttaacacaactttctgtcatggaaaaat |
45041672 |
T |
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| Q |
101 |
caagtatttgttagcactgaacactcgctttctttctactacgatattatgcaat |
155 |
Q |
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| T |
45041673 |
caagtatttgttagcactgaacactcactttctttctactacgatattatgcaat |
45041727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 45036287 - 45036424
Alignment:
| Q |
1 |
attcaatacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttccaactttaacacaactttctgtcatggaaaaat |
100 |
Q |
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| T |
45036287 |
attcaatacctgaaaggccagagactgctttcatagctttttgcttgattttgtcttcatttatttccaactttaacacaactttctgtaacaaaaatat |
45036386 |
T |
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| Q |
101 |
caagtatttgttagcactgaacactcgctttctttcta |
138 |
Q |
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| T |
45036387 |
caagtagttgttagaacagaacacttactttccttcta |
45036424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 46175758 - 46175887
Alignment:
| Q |
7 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttccaactttaacacaactttctgtcatggaaaaatcaagta |
106 |
Q |
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| T |
46175758 |
tacctgagaggccagagactgccttcatagctttttgtttaattttgtcttcatgaatctccaactttagcacaattttctgtcaaagaaaaa--atata |
46175855 |
T |
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| Q |
107 |
tttgttagcactgaacactcgctttctttcta |
138 |
Q |
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| T |
46175856 |
gttgttagaactgaacactcactatctttcta |
46175887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 45043653 - 45043735
Alignment:
| Q |
7 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttccaactttaacacaactttctgt |
89 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |||||| | ||||||| || |||||||||| ||||| ||||||| |
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| T |
45043653 |
taccggaaaggccagagactgccttcatagctttttgtttgattttgtcttcatgaatctccaactttagcacaattttctgt |
45043735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 17862092 - 17862154
Alignment:
| Q |
7 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttcca |
69 |
Q |
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| T |
17862092 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatgtatatcca |
17862154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 17872667 - 17872729
Alignment:
| Q |
7 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatcttcatttatttcca |
69 |
Q |
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| T |
17872667 |
tacctgaaaggccagagactgtcttcatagctttttgcttggttctgtcatcatatatatcca |
17872729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 11390449 - 11390401
Alignment:
| Q |
7 |
tacctgaaaggccagagactgccttcatagccttttgcttgattctatc |
55 |
Q |
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| T |
11390449 |
tacctgaaaggctagatactgtcttcataactttttgcttgattctatc |
11390401 |
T |
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