View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_88 (Length: 241)
Name: NF3097_low_88
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 36755407 - 36755620
Alignment:
| Q |
17 |
agaatgggcaagagtccgtgtttacttttatgcgggaggtaatgtattttactggtgagatctcattttggtggctgtgctatgatcgattttctacatt |
116 |
Q |
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| T |
36755407 |
agaatggg-aagagtccgtgtttacttttatgcgggaggtaatgtattttactggcgagatctcattttggtggctgtgctatgatcgattttctacatt |
36755505 |
T |
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| Q |
117 |
cggttcgggggtttttagtgtctactggtgtggtttgcattgtaattatgtgtactgtcatttgtttttcggctgatatggctatagctttttccctatt |
216 |
Q |
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| T |
36755506 |
cggttcgggggtttttactgtctactggtgtggtttgcattgtaattctgtgtactgtcatttgtttttcggctgatatggctatagctttttccctaat |
36755605 |
T |
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| Q |
217 |
ggtatgctctctgtg |
231 |
Q |
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||||||||||||||| |
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| T |
36755606 |
ggtatgctctctgtg |
36755620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 36747952 - 36748086
Alignment:
| Q |
33 |
cgtgtttacttttatgcgggaggtaatgtattttactggtgagatctcattttggtggctgtgctatgatcgattttctacattcggttcgggggttttt |
132 |
Q |
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| T |
36747952 |
cgtgtttacttttatgtgggaggtaatgtattttacatgcgagatctcaattcggtggctgtgatatgatcgattttctacattcggttcggggtttttt |
36748051 |
T |
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| Q |
133 |
agtgtctactggtgtggtttgcattgtaattatgt |
167 |
Q |
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| T |
36748052 |
agtgtctactggtgtggtttgcattgtaattatgt |
36748086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 36766332 - 36766483
Alignment:
| Q |
43 |
tttatgcgggaggtaatgtattttactggtgagatctcattttggtggctgtgctatgatcgattttctacattcggttcgggggtttttagtgtctact |
142 |
Q |
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|||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||| |||||||| | |
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| T |
36766332 |
tttatgggggaggtaatgtattttactggcgagatctcaattcggtggctgtgctatgatcgattttctaca-taggttcgggggttttaagtgtctagt |
36766430 |
T |
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| Q |
143 |
ggtgtggtttgcattgtaattatgtgtactgtcatttgtttttcggctgatatgg |
197 |
Q |
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| T |
36766431 |
ggcatggtttgaattgtaat--tgtgtacggtcatttgtttttcggctgatatgg |
36766483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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