View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_89 (Length: 239)
Name: NF3097_low_89
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41557869 - 41558076
Alignment:
| Q |
14 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataaccatattatagataaattgaagggtaggttgag |
113 |
Q |
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| T |
41557869 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgag |
41557968 |
T |
|
| Q |
114 |
aaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41557969 |
aaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggtt |
41558068 |
T |
|
| Q |
214 |
ccagcata |
221 |
Q |
| |
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|||||||| |
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| T |
41558069 |
ccagcata |
41558076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41583998 - 41584206
Alignment:
| Q |
14 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtcttt-gaaattgaataaccatattatagataaattgaagggtaggttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |
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| T |
41583998 |
cagagacatacaggcattggcattctaggcacatagtaaatgggtttaggtcttttgaaattgaataagcagattatagataaattgaagggtaggttga |
41584097 |
T |
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| Q |
113 |
gaaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41584098 |
gaaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggt |
41584197 |
T |
|
| Q |
213 |
tccagcata |
221 |
Q |
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||||||||| |
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| T |
41584198 |
tccagcata |
41584206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41571581 - 41571788
Alignment:
| Q |
14 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataaccatattatagataaattgaagggtaggttgag |
113 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||||||||| |||| || |||||||||||||||||| ||| |||||| |
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| T |
41571581 |
cagagacatataggcaatggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcagattatagataaattgaagtgtaagttgag |
41571680 |
T |
|
| Q |
114 |
aaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
213 |
Q |
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| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41571681 |
agatgatgcatataatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggatt |
41571780 |
T |
|
| Q |
214 |
ccagcata |
221 |
Q |
| |
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|||||||| |
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|
| T |
41571781 |
ccagcata |
41571788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 41590529 - 41590736
Alignment:
| Q |
14 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataaccatattatagataaattgaagggtaggttgag |
113 |
Q |
| |
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|||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||| ||||||||||| ||| |||||| |
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| T |
41590529 |
cagagacatatatgcattggcattctaggcacatgggaaatgggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgag |
41590628 |
T |
|
| Q |
114 |
aaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
213 |
Q |
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| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41590629 |
agatgatgcatataatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggatt |
41590728 |
T |
|
| Q |
214 |
ccagcata |
221 |
Q |
| |
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||| |||| |
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|
| T |
41590729 |
ccaacata |
41590736 |
T |
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