View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3097_low_9 (Length: 499)

Name: NF3097_low_9
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3097_low_9
NF3097_low_9
[»] chr6 (17 HSPs)
chr6 (303-483)||(34115454-34115634)
chr6 (120-208)||(34115271-34115359)
chr6 (306-393)||(34149756-34149843)
chr6 (306-393)||(34162372-34162459)
chr6 (303-394)||(34169583-34169674)
chr6 (307-396)||(34091754-34091843)
chr6 (307-396)||(34106598-34106687)
chr6 (171-208)||(34149520-34149557)
chr6 (171-208)||(34162136-34162173)
chr6 (303-379)||(34109482-34109558)
chr6 (305-393)||(34120079-34120167)
chr6 (305-393)||(34147240-34147328)
chr6 (305-393)||(34159856-34159944)
chr6 (14-58)||(34169293-34169337)
chr6 (12-43)||(34115183-34115214)
chr6 (171-205)||(34169429-34169463)
chr6 (441-478)||(34135863-34135900)
[»] scaffold0620 (1 HSPs)
scaffold0620 (307-396)||(7088-7177)
[»] chr4 (2 HSPs)
chr4 (437-478)||(38648656-38648697)
chr4 (440-478)||(48430876-48430914)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 8e-93; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 303 - 483
Target Start/End: Original strand, 34115454 - 34115634
Alignment:
Q  303 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115454 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt 34115553  T
Q  403 ctgaaaatgttaacaaagtttatagttccgaccattagcaatgcttttgatttaagtttcataattttagtttcttcattc 483  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34115554 ctggaaatgttaacaaagtttatagttccgaccattagcaatgcttttgatttaagttttataattttagtttcttcattc 34115634  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 34115271 - 34115359
Alignment:
Q  120 caaaggctatgatgaatcattcattttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaaggcaa 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115271 caaaggctatgatgaatcattcaatttttggagatactccaaacggagtaaataccccagaaggagatctttggcaaaatccaaggcaa 34115359  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 34149756 - 34149843
Alignment:
Q  306 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 393  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||| |||| |||||||||||||    
T  34149756 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt 34149843  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 393
Target Start/End: Original strand, 34162372 - 34162459
Alignment:
Q  306 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 393  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||| |||| |||||||||||||    
T  34162372 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt 34162459  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 394
Target Start/End: Original strand, 34169583 - 34169674
Alignment:
Q  303 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttt 394  Q
    |||||||||| |||||||| |||  |||||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||    
T  34169583 gcgaagatgttacatgttgctgtcattgctgaaattcaaagcggcatgaaaaatgtgaagtgtgcatatgatttaaaaactgaggcatgttt 34169674  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 34091754 - 34091843
Alignment:
Q  307 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 396  Q
    ||||||| |||| |||||| || |||||||||  ||||||| |||| || ||||||||||| | |||| |||| ||||||||||||||||    
T  34091754 agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt 34091843  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 34106598 - 34106687
Alignment:
Q  307 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 396  Q
    |||||||||||| ||||||  | |||||||||  |||||||||||| || ||||||||||| | |||| |||| || |||| ||||||||    
T  34106598 agatgtcacatgatgatgtcctagctgaaattaaaagcggcatgaaaaaggcgaagtgtgcgtttgatataaaaaccgaggtaagttttt 34106687  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 34149520 - 34149557
Alignment:
Q  171 ataccccagaaggagatctttggcaaaatccaaggcaa 208  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34149520 ataccccaaaaggagatctttggcaaaatccaaggcaa 34149557  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 34162136 - 34162173
Alignment:
Q  171 ataccccagaaggagatctttggcaaaatccaaggcaa 208  Q
    |||||||| |||||||||||||||||||||||||||||    
T  34162136 ataccccaaaaggagatctttggcaaaatccaaggcaa 34162173  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 34109482 - 34109558
Alignment:
Q  303 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaa 379  Q
    ||||||||||| |||| ||||||  |||||||||||  |||||||||||| || ||||| ||||| | |||||||||    
T  34109482 gcgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgatttaaa 34109558  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 34120079 - 34120167
Alignment:
Q  305 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 393  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34120079 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34120167  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 34147240 - 34147328
Alignment:
Q  305 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 393  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34147240 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34147328  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 34159856 - 34159944
Alignment:
Q  305 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 393  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34159856 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34159944  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 34169293 - 34169337
Alignment:
Q  14 ttctaaaaatggtaaagccaatagtctcatggaatttaactgatt 58  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||    
T  34169293 ttctgaaaatgataaagcctatagtctcatggaatttaactgatt 34169337  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 34115183 - 34115214
Alignment:
Q  12 aattctaaaaatggtaaagccaatagtctcat 43  Q
    ||||||||||||||||||||||||||||||||    
T  34115183 aattctaaaaatggtaaagccaatagtctcat 34115214  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 34169429 - 34169463
Alignment:
Q  171 ataccccagaaggagatctttggcaaaatccaagg 205  Q
    |||||||| ||||||||||||||||||||||||||    
T  34169429 ataccccaaaaggagatctttggcaaaatccaagg 34169463  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 34135900 - 34135863
Alignment:
Q  441 caatgcttttgatttaagtttcataattttagtttctt 478  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  34135900 caatgcttttgattcaagtttcacaattttagtttctt 34135863  T

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Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 7088 - 7177
Alignment:
Q  307 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 396  Q
    ||||||| |||| |||||| || |||||||||  ||||||| |||| || ||||||||||| | |||| |||| ||||||||||||||||    
T  7088 agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt 7177  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 38648697 - 38648656
Alignment:
Q  437 ttagcaatgcttttgatttaagtttcataattttagtttctt 478  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  38648697 ttagcaatgcttttgattcaagtttcacaattttagtttctt 38648656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 478
Target Start/End: Complemental strand, 48430914 - 48430876
Alignment:
Q  440 gcaatgcttttgatttaagtttcataattttagtttctt 478  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  48430914 gcaatgcttttgattcaagtttcacaattttagtttctt 48430876  T

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