View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_90 (Length: 238)
Name: NF3097_low_90
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 38709281 - 38709068
Alignment:
| Q |
18 |
atatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttcc |
117 |
Q |
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| T |
38709281 |
atatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttcc |
38709182 |
T |
|
| Q |
118 |
acatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactca |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709181 |
acacggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactca |
38709082 |
T |
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| Q |
218 |
ccacattcatctca |
231 |
Q |
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|||||||| ||||| |
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| T |
38709081 |
ccacattcttctca |
38709068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 10047318 - 10047105
Alignment:
| Q |
18 |
atatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttcc |
117 |
Q |
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||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| |
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| T |
10047318 |
atatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgacttcaccccagtttcagcatttacaatccctccattcttttcg |
10047219 |
T |
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| Q |
118 |
acatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactca |
217 |
Q |
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| T |
10047218 |
acacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctcatcaatttcttcccttataagcatcatagatagctctgtca |
10047119 |
T |
|
| Q |
218 |
ccacattcatctca |
231 |
Q |
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|||||||| ||||| |
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| T |
10047118 |
ccacattcttctca |
10047105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
52 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
151 |
Q |
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|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
152 |
catcaatgtatacagttgtgttctcatcaattt |
184 |
Q |
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| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 739517 - 739691
Alignment:
| Q |
38 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
137 |
Q |
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||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
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| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
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| Q |
138 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctc |
212 |
Q |
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||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |
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| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctc |
739691 |
T |
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