View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3097_low_97 (Length: 237)
Name: NF3097_low_97
Description: NF3097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3097_low_97 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9583936 - 9584140
Alignment:
| Q |
1 |
aaattcattcgtcattaacaccaaattattaaccaagattcattgaagtaaagaaaattttcaaaggataaccttcactttattcaaataagcacactcn |
100 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9583936 |
aaattcattcgtcattaacaccaa-ttattaatcaagattcattgaagtaaagaaaattttcaaaggataaccttcactttattcaaataagcacactct |
9584034 |
T |
|
| Q |
101 |
nnnnnncaaaccacagctccaacaacatttagatcatcaaagagaccaagaaatggaacaagagaacaaagaataccaataacactatcactaaaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9584035 |
ttttttcaaaccacagctccaacaacatttagatcatcaaagagaccaagaaatggaacaagagaacaaagaataccaataacactatcactaaaatttc |
9584134 |
T |
|
| Q |
201 |
acgcgg |
206 |
Q |
| |
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|||||| |
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| T |
9584135 |
acgcgg |
9584140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9589631 - 9589835
Alignment:
| Q |
1 |
aaattcattcgtcattaacaccaaattattaaccaagattcattgaagtaaagaaaattttcaaaggataaccttcactttattcaaataagcacactcn |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9589631 |
aaattcattcgtcattaacaccaa-ttattaatcaagattcattgaagtaaagaaaattttcaaaggataaccttcactttattcaaataagcacactct |
9589729 |
T |
|
| Q |
101 |
nnnnnncaaaccacagctccaacaacatttagatcatcaaagagaccaagaaatggaacaagagaacaaagaataccaataacactatcactaaaatttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9589730 |
ttttttcaaaccacagctccaacaacatttagatcatcaaagagaccaagaaatggaacaagagaacaaagaataccaataacactatcactaaaatttc |
9589829 |
T |
|
| Q |
201 |
acgcgg |
206 |
Q |
| |
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|||||| |
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|
| T |
9589830 |
acgcgg |
9589835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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