View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_high_1 (Length: 661)
Name: NF3101_high_1
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 282 - 654
Target Start/End: Complemental strand, 43606332 - 43605961
Alignment:
| Q |
282 |
agaataatactatcaacaaggggagattatgatgcaaacaatataataggaatatatttggttaatatatgttaccttagtaatagggttttattttgtt |
381 |
Q |
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| T |
43606332 |
agaataatactatcaacaaggggagattatgatgcaaacaatataataggaatatatttggttaatatatgttaccttagtaatagg-ttttattttgtt |
43606234 |
T |
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| Q |
382 |
ttgaaccttactctatgcacatattttcttgatggactagtaggaaacacctcatttctacctccaccaataattttcctgcttagaagttacatcatct |
481 |
Q |
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| T |
43606233 |
ttgaaccttactctatgcacatattttcttgatggactagtaggaaacacctcatttctacctccaccaataattttcctgcttagaagttacatcatct |
43606134 |
T |
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| Q |
482 |
gtgaaactgttggagtgcttgtttacaatattttactttcatttttatttcagatcagctatattacttgatgtagttgccataagtgccctaataatat |
581 |
Q |
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| T |
43606133 |
gtgaaacttttggagtgcttgtttacaatattttactttcatttttatttcagatcagctatattacttgatgtagttgccataagtgccctaataatat |
43606034 |
T |
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| Q |
582 |
ttgggagtcgtgtggttctaggttacaaacagacgtgggatcggtatcaggtagattaacatgatatattctt |
654 |
Q |
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| T |
43606033 |
ttgggagtcgtgtggttcttggttacaaacagacgtgggatcggtatcaggtagattaacatgatattttctt |
43605961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 43606593 - 43606362
Alignment:
| Q |
20 |
tggcatattttataaactacaaatttgagaatctctcagattccccgtatgtacatcttaatttcatatgatatttatgatattcctaaacgatgtttct |
119 |
Q |
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| T |
43606593 |
tggcatattttataaactacaaatttgagaatctctcagattccccgtatgtacatcttaatttcatatgatatttatgatattcctaaacgatgtttct |
43606494 |
T |
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| Q |
120 |
gcatctaaatgatttttactgattttaattatggttctaatttcgtctctagactcaattatctttgatgctagaaaggaattgcctttgnnnnnnnctt |
219 |
Q |
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| T |
43606493 |
gcatctaaatgatttttactgattttaattatggttctaatttcgtctctagactcaattatctttgatgctagaaaggaattgcctttgtttttttctt |
43606394 |
T |
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| Q |
220 |
tcacaatgcgggtagctaccttaatcgtgtac |
251 |
Q |
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| T |
43606393 |
tcacaatgctggtagctaccttaatcgtgtac |
43606362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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