View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_high_17 (Length: 293)
Name: NF3101_high_17
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 5100341 - 5100065
Alignment:
| Q |
1 |
ttgctgcagaaaccttcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctat |
100 |
Q |
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| T |
5100341 |
ttgctgcagaaaccttcataactttattttttagtaaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctat |
5100242 |
T |
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| Q |
101 |
ttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagttcattcaccataacatt |
198 |
Q |
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| T |
5100241 |
ttgaaccgtactatgagttataacattcatatgtcttttaacaaattggacaggacagtcttcaacctagtttagcaatgtgttcattcaccataacatt |
5100142 |
T |
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| Q |
199 |
tgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttga |
275 |
Q |
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| T |
5100141 |
tgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgaatacttgaaacggttgatcagtttttga |
5100065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 5135560 - 5135339
Alignment:
| Q |
56 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacagga |
153 |
Q |
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| T |
5135560 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtattatgagttataacattcatatgtcttctaacaaattggacagga |
5135461 |
T |
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| Q |
154 |
cagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
253 |
Q |
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| T |
5135460 |
cagtcttcaacctagtttagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
5135361 |
T |
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| Q |
254 |
gaaacggttgatcagtttttga |
275 |
Q |
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| T |
5135360 |
gaaacggttgatcagtttttga |
5135339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 2939543 - 2939723
Alignment:
| Q |
1 |
ttgctgcagaaaccttcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctat |
100 |
Q |
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||||| ||||| |||||||||| |||| ||||||| |||||||||||| ||||||||| |||| | ||||| || |||||||||||||||||||||||| |
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| T |
2939543 |
ttgctacagaagccttcataaccttatttttgagtaaacatttattttggtccctaacagtgt--gtcgctcacactatagaccctgaatgatcagctat |
2939640 |
T |
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| Q |
101 |
ttgaaccgtactatgagttataacattcatg-tcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagtt |
182 |
Q |
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| T |
2939641 |
ttgaaccatactacgagctataacatttatgtttttttaacaaattgcacaggacagacttcaatctagtttagtaataagtt |
2939723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 5242065 - 5241981
Alignment:
| Q |
17 |
cataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatt |
101 |
Q |
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||||||||||| ||||| | |||| ||||||| |||||||| |||| |||| |||||| ||||| || |||||||||||||||| |
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| T |
5242065 |
cataactttatttttgattgaacaattattttggtccctaatagtgtgaggcactctcactatagtccttgaatgatcagctatt |
5241981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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