View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_high_9 (Length: 398)
Name: NF3101_high_9
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 34057638 - 34058016
Alignment:
| Q |
16 |
tatctatcattgtagttttgaatacattttaattgtcattggaattatcaaagtaatcataggatttactatgttgaatcatgaagaaaaatggaaatca |
115 |
Q |
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| T |
34057638 |
tatctatcattgtagttttgaatacattttaattgtcatgggaattatcaaagtaatcataggatttactatgttgaatcatgaagaaaaatggaaatca |
34057737 |
T |
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| Q |
116 |
acttacattatagtcttttttgcatttgatgtaattgtcctgttgctggaagaaatcacatggatgttggtacttctagagcagaggtctaattaagatg |
215 |
Q |
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| T |
34057738 |
acttacattatagtcttttttgcatttgatgtaattgtcctgttgctggaagaaatcacatggatgttggtacttctagagcagaggtctaattaatatg |
34057837 |
T |
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| Q |
216 |
ggctttgatcaagttcagaacaattattaaatgcaagtatattaattagaatttagtttacatgtgttgatgctatata-------------acatagtt |
302 |
Q |
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| T |
34057838 |
ggctttgatcaagttcagaacaattattaaatgcaagtatattaattagaatttagtttacatgtgttgatggtatataacatagtttcattacatagtt |
34057937 |
T |
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| Q |
303 |
tcatacacactaaaataaaaattcactggatacatta--------ttatgtcatagtgttgtatcataaaatactcgcc |
373 |
Q |
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| T |
34057938 |
tcatacacactaaaataaaaattcagtgggtacattagtatgtatgtatgtcatagtgttgtatcataaaatactcgcc |
34058016 |
T |
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