View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3101_low_1 (Length: 771)

Name: NF3101_low_1
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3101_low_1
NF3101_low_1
[»] chr3 (7 HSPs)
chr3 (15-235)||(1653387-1653607)
chr3 (453-577)||(1653802-1653926)
chr3 (639-755)||(1653990-1654106)
chr3 (344-392)||(1653693-1653741)
chr3 (56-159)||(20611251-20611354)
chr3 (80-199)||(17501769-17501888)
chr3 (80-226)||(19175882-19176028)
[»] chr7 (3 HSPs)
chr7 (27-191)||(38305674-38305839)
chr7 (27-204)||(3420141-3420319)
chr7 (56-155)||(47326382-47326481)
[»] chr1 (6 HSPs)
chr1 (485-575)||(26841797-26841887)
chr1 (27-195)||(41919892-41920062)
chr1 (643-749)||(26841622-26841725)
chr1 (61-226)||(24685026-24685191)
chr1 (347-392)||(13986965-13987010)
chr1 (87-182)||(4651227-4651322)
[»] chr4 (1 HSPs)
chr4 (81-226)||(30963842-30963987)
[»] chr8 (7 HSPs)
chr8 (86-226)||(34866599-34866739)
chr8 (643-722)||(15049701-15049780)
chr8 (485-575)||(15049862-15049952)
chr8 (130-226)||(9519020-9519116)
chr8 (81-195)||(34389550-34389664)
chr8 (27-115)||(31210563-31210658)
chr8 (36-227)||(10551706-10551891)
[»] chr2 (5 HSPs)
chr2 (64-159)||(39339351-39339446)
chr2 (87-205)||(31902927-31903045)
chr2 (80-230)||(2062217-2062367)
chr2 (353-392)||(9561543-9561582)
chr2 (172-230)||(27739124-27739182)
[»] chr6 (2 HSPs)
chr6 (87-204)||(12793538-12793655)
chr6 (45-204)||(16510789-16510948)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 1653387 - 1653607
Alignment:
Q  15 caccaaaactagataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaa 114  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  1653387 caccaaaactgaataacctccaccaccactgcatcaccactaccaacactgcattacaacgttgacaaacctcctcacgaagaaacaggcagcaacacaa 1653486  T
Q  115 acatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccag 214  Q
    ||||| |||||| ||||||| ||||||||||| |||||||| ||||| ||||  |||||||||| |||||||||||||||||||||||||||||| ||||    
T  1653487 acataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagcgaaaagacaacccagatcgtaacaaggttgccgccag 1653586  T
Q  215 tgacaaggagaaggcgcaacg 235  Q
    |||||||||||||||||||||    
T  1653587 tgacaaggagaaggcgcaacg 1653607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 453 - 577
Target Start/End: Original strand, 1653802 - 1653926
Alignment:
Q  453 gtccccctggagaagtcggaacagctaacagaaacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccat 552  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1653802 gtccccccggagaagtcggaacagctgacagaaacacacactacacaaccacaaccacccacctcttacccgctagtgaaccattaacgaccacccccat 1653901  T
Q  553 aacgacctttcactggcgcaacaga 577  Q
    |||||||| ||||||||||||||||    
T  1653902 aacgacctctcactggcgcaacaga 1653926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 639 - 755
Target Start/End: Original strand, 1653990 - 1654106
Alignment:
Q  639 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttga 738  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||||||||| ||||| |||    
T  1653990 aaataacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctgaacaccactcaaacacaccatggaaaccatacagaggagatga 1654089  T
Q  739 agaaaccaccacaaatc 755  Q
    |||||||||||||||||    
T  1654090 agaaaccaccacaaatc 1654106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 1653693 - 1653741
Alignment:
Q  344 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653693 gcaacacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 1653741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 20611354 - 20611251
Alignment:
Q  56 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 155  Q
    |||| ||||||||||| | | || ||||| |||||||||||||||||||| ||||||||| |||||| | |  |||||  ||||||||||| ||||||||    
T  20611354 accaccactgcatcactatgccgccaaacatcctcaccaagaaacaggcatcaacacaaatatagatctagatgaagaggaaatccaacaacaaaacacg 20611255  T
Q  156 agca 159  Q
    ||||    
T  20611254 agca 20611251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 17501769 - 17501888
Alignment:
Q  80 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 179  Q
    ||||| |||||||||| ||| ||| ||||||||||| |||||| | | ||||||| ||||| ||||| ||||||||  ||   |||  ||||||||||||    
T  17501769 caaacatcctcaccaaaaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcgg 17501868  T
Q  180 aaagacaacccagatcgtaa 199  Q
    ||| |||||| |||||||||    
T  17501869 aaacacaacctagatcgtaa 17501888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 19176028 - 19175882
Alignment:
Q  80 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 179  Q
    ||||| |||||||||||||||| ||| || |||||||||| || |   || |||||||||||||||| |||||||| ||| | | ||  |||||||| ||    
T  19176028 caaacatcctcaccaagaaacaagcaacagcacaaacataaatctaaagggagacaaaatccaacaacaaaacacgggcagcgatgccggtttgaagagg 19175929  T
Q  180 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 226  Q
    ||  |||||||| ||| ||| ||||  ||| || |||||||||||||    
T  19175928 aaccacaacccatatcataaaaaggcagccgcctgtgacaaggagaa 19175882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 38305839 - 38305674
Alignment:
Q  27 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 125  Q
    |||||||| ||||||||||||||||||| |||  ||||||||||| ||| |  |||| | |||||||||||||||| ||| ||||||||||||  || |     
T  38305839 ataacctccaccaccactgcatcaccaccaccgtcactgcatcactacgccaccaaaacatcctcaccaagaaacaagcaacaacacaaacatcaatcta 38305740  T
Q  126 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaaccca 191  Q
    | ||||||| ||||||||||| |||||||  ||| ||||||  |||||||||||||  ||||||||    
T  38305739 gaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaaccca 38305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 3420141 - 3420319
Alignment:
Q  27 ataacctctaccaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatatg 125  Q
    |||||||| ||||||||||||||||||| ||   ||||||||||| |||||| |||| | |||||||||||||||| ||| |||||||  |||| || |     
T  3420141 ataacctccaccaccactgcatcaccaccactgtcactgcatcactacgtcgccaaaacatcctcaccaagaaacaagcaacaacacatgcataaattta 3420240  T
Q  126 ggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 204  Q
    | ||||||| ||| | ||||| |||||||||||| | ||||  ||| |||||||||  |||||| ||||| ||| ||||    
T  3420241 gaggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatcataaaaagg 3420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 47326382 - 47326481
Alignment:
Q  56 accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacg 155  Q
    |||| ||||||||||| ||| || ||||| |||||||||||||||| ||||||||||||| || ||| | | ||||||  ||||||||||| ||||||||    
T  47326382 accaccactgcatcactacgccgccaaacatcctcaccaagaaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacg 47326481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 485 - 575
Target Start/End: Complemental strand, 26841887 - 26841797
Alignment:
Q  485 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 575  Q
    ||||||||| ||||||| |||||||||||||| |  || ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||    
T  26841887 aacacacaccacacaactgcaaccacccacctttggccggctagtgaaccattaaccaccaccctcataacgacctctcactggtgcaaca 26841797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 41920062 - 41919892
Alignment:
Q  27 ataacctctaccaccactgcatcaccactac-caacactgcatcacaacgtcgacaaacc-tcctcaccaagaaacaggcagcaacacaaacatagatat 124  Q
    |||||||| |||||| ||| ||||||||  | || ||||||||||| ||| || |||| | |||||||||||||||| ||| ||||||||||||| || |    
T  41920062 ataacctccaccacctctgaatcaccaccgcgcatcactgcatcactacgccgccaaaacatcctcaccaagaaacaagcaacaacacaaacataaatct 41919963  T
Q  125 gggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatc 195  Q
     | ||||||  |||||| |||| |||||||| ||| | ||||| |||||||||||||  ||||||||||||    
T  41919962 agaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacccagatc 41919892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 643 - 749
Target Start/End: Complemental strand, 26841725 - 26841622
Alignment:
Q  643 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaaccatacataggagttgaagaa 742  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||   || ||||  |||||| |||||| ||||| |||| ||||| ||||||     
T  26841725 aacttaacccaccaaaaactatctcgaaaacagccataaaaggaacatat---aacaccactgaaacaaaccatgaaaaccgtacagaggagatgaagag 26841629  T
Q  743 accacca 749  Q
    |||||||    
T  26841628 accacca 26841622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 24685026 - 24685191
Alignment:
Q  61 cactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcat 160  Q
    ||||||||||| ||| || ||||| |||||||||||||||| ||| ||||||||||||| || |   |  ||||||||| |||||| |||||||| |||     
T  24685026 cactgcatcactacgccgccaaacatcctcaccaagaaacaagcaacaacacaaacataaatctaaagagagacaaaattcaacaacaaaacacgggcag 24685125  T
Q  161 caacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 226  Q
    | ||||  ||||||||| |||  |||||||| ||| ||| ||| | ||| || |||||||||||||    
T  24685126 cgacgccggtttgaagcagaaccacaacccatatcataaaaagctggccgcctgtgacaaggagaa 24685191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 13987010 - 13986965
Alignment:
Q  347 acacccaaagaggacggtggcgcaaaaccaccacccactccttcgg 392  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||    
T  13987010 acacccaaagaggacggcgacgcaaaaccaccacccactccttcgg 13986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 4651322 - 4651227
Alignment:
Q  87 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaa 182  Q
    |||||||||||||||| |||||||||||||||||||   | ||||||| ||| | ||||| ||||||| |||| | || |  ||||||||||||||    
T  4651322 cctcaccaagaaacagacagcaacacaaacatagatcatgaggaagacgaaacctaacaacaaaacacaagcagcgacaccggtttgaagcggaaa 4651227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 30963987 - 30963842
Alignment:
Q  81 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 180  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||| | |||||||| ||||| ||||  |||||||| |||    
T  30963987 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtgga 30963888  T
Q  181 aagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 226  Q
    |  |||||||||||| ||| ||| | | | || |||||||||||||    
T  30963887 accacaacccagatcataaaaagatggtcgcctgtgacaaggagaa 30963842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 34866599 - 34866739
Alignment:
Q  86 tcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagac 185  Q
    |||||||||||||||| ||| ||||||||||||| || | | ||||||| ||||||||||| |||||||| ||| | ||||  |||||||||||||  ||    
T  34866599 tcctcaccaagaaacaagcaacaacacaaacataaatttagaggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccac 34866698  T
Q  186 aacccagatcgtaacaaggttgccaccagtgacaaggagaa 226  Q
    ||||||| || ||| ||||  | | || |||||||||||||    
T  34866699 aacccaggtcataaaaaggcggtcgcctgtgacaaggagaa 34866739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 643 - 722
Target Start/End: Complemental strand, 15049780 - 15049701
Alignment:
Q  643 aacttaacccaccaaaaacaagctcgaaaacagccataaaaggaacatatctaaataccaaagaaacacaccatggaaac 722  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||||   ||||| |||||||||||    
T  15049780 aacttaacccaccaaaaactagctcgaaaatagccataaatggaacatatctgaaaaccactaaaacaaaccatggaaac 15049701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 575
Target Start/End: Complemental strand, 15049952 - 15049862
Alignment:
Q  485 aacacacactacacaaccgcaaccacccacctcttacctgctagtgaaccattaacgaccacccccataacgacctttcactggcgcaaca 575  Q
    ||||||||| ||| |||||||||||| ||||| |  ||  |||||||||||||||| ||||||||||||||||||| |||| | |||||||    
T  15049952 aacacacaccacataaccgcaaccacacacctatggccgactagtgaaccattaaccaccacccccataacgacctctcaccgacgcaaca 15049862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 9519116 - 9519020
Alignment:
Q  130 aagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaa 226  Q
    ||||| ||| ||||||| |||||||| ||| | ||||| ||||||||||| || |||||||| || ||||||| |||||||||  ||||||||||||    
T  9519116 aagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaatagtaacaatgttgccacctttgacaaggagaa 9519020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 34389550 - 34389664
Alignment:
Q  81 aaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgga 180  Q
    |||| |||||||||||||||| ||| ||||||||||||| || | | ||| ||| |||| | |||| |||||||| ||| | ||||  ||||||||||||    
T  34389550 aaacatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcgga 34389649  T
Q  181 aagacaacccagatc 195  Q
    |  ||||||||||||    
T  34389650 agcacaacccagatc 34389664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 31210563 - 31210658
Alignment:
Q  27 ataacctctaccaccactgcatcaccact-------accaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaa 115  Q
    |||||||| ||||||||| ||||||||||       |||| ||||||||||| ||| || ||||| || |||||||||||||||||||||||||||    
T  31210563 ataacctccaccaccactacatcaccactgcgcatcaccaccactgcatcactacgccgccaaacatcgtcaccaagaaacaggcagcaacacaaa 31210658  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 227
Target Start/End: Complemental strand, 10551891 - 10551706
Alignment:
Q  36 accaccactgcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagaca 135  Q
    ||||||||||||||||||| ||||      | ||| |||| ||||||||   ||| |||||||| || ||||||||||||||||||| | | |||||||     
T  10551891 accaccactgcatcaccaccacca------cttcataacgccgacaaacagtctctccaagaaatagacagcaacacaaacatagatctagaggaagacg 10551798  T
Q  136 aaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaag 227  Q
    ||| ||||||| ||| |||| ||| | ||||   ||||||||||||| || |||| |||| ||| |||| || |  | ||||||||||||||    
T  10551797 aaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaaacacgaccccgatcataaaaaggctgtcgtcggtgacaaggagaag 10551706  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 39339351 - 39339446
Alignment:
Q  64 tgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagca 159  Q
    |||||||| ||| || ||||| ||||||||||||||||| |||||||||||| |||||| | | ||||||  ||||||||||| ||||||||||||    
T  39339351 tgcatcactacgccgccaaacatcctcaccaagaaacagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagca 39339446  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 205
Target Start/End: Original strand, 31902927 - 31903045
Alignment:
Q  87 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 186  Q
    ||||| |||||||||  ||||||||| ||||||||| | | ||||||| ||| ||||||| |||||||| ||| | ||||  |||||||||||||| |||    
T  31902927 cctcagcaagaaacaaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacaca 31903026  T
Q  187 acccagatcgtaacaaggt 205  Q
    ||| ||||| ||| |||||    
T  31903027 acctagatcataaaaaggt 31903045  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 2062367 - 2062217
Alignment:
Q  80 caaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcgg 179  Q
    |||||| |||||||||||||| || ||| ||||||||| ||||   | | ||||   || ||||||| |||||||| ||| | ||||  || ||||||||    
T  2062367 caaaccacctcaccaagaaactggaagctacacaaacacagatcaagagaaagatgcaacccaacaacaaaacacgggcagcgacgccggtctgaagcgg 2062268  T
Q  180 aaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 230  Q
    ||| ||||||||||||||||  ||||  ||||| | |||||||||||||||    
T  2062267 aaacacaacccagatcgtaaacaggtatccaccggagacaaggagaaggcg 2062217  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 9561543 - 9561582
Alignment:
Q  353 aaagaggacggtggcgcaaaaccaccacccactccttcgg 392  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  9561543 aaagaggacgatgacgcaaaaccaccacccactccttcgg 9561582  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 27739182 - 27739124
Alignment:
Q  172 tgaagcggaaagacaacccagatcgtaacaaggttgccaccagtgacaaggagaaggcg 230  Q
    ||||||||||| ||||| ||||||| || ||||| ||||| ||||||||| ||||||||    
T  27739182 tgaagcggaaacacaacgcagatcgaaaaaaggtggccactagtgacaagaagaaggcg 27739124  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 12793655 - 12793538
Alignment:
Q  87 cctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaacaataaaacacgagcatcaacgctagtttgaagcggaaagaca 186  Q
    |||||||||||||||| ||||||||||||  |||||   | ||||||| ||||||| ||  |||||||| ||| | |||| ||||||||||| ||| |||    
T  12793655 cctcaccaagaaacagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaagcgaaaacaca 12793556  T
Q  187 acccagatcgtaacaagg 204  Q
    ||||| ||||||| ||||    
T  12793555 acccatatcgtaaaaagg 12793538  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 16510789 - 16510948
Alignment:
Q  45 gcatcaccactaccaacactgcatcacaacgtcgacaaacctcctcaccaagaaacaggcagcaacacaaacatagatatgggggaagacaaaatccaac 144  Q
    |||| ||||| |||| |||| |||||| ||| || ||| | |||||||||||||||| ||| ||||||||||||| || | | ||||||| | |||||||    
T  16510789 gcataaccaccaccatcactacatcactacgccgccaaccatcctcaccaagaaacaagcaacaacacaaacataaatctagaggaagacgacatccaac 16510888  T
Q  145 aataaaacacgagcatcaacgctagtttgaagcggaaagacaacccagatcgtaacaagg 204  Q
    || |||||||| ||| | | ||  ||||||||| |||  |||||||| ||| ||| ||||    
T  16510889 aacaaaacacgggcagcgatgccggtttgaagcagaaccacaacccatatcataaaaagg 16510948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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