View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3101_low_10 (Length: 468)
Name: NF3101_low_10
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 40181180 - 40180736
Alignment:
| Q |
17 |
gatgatcaagaagaatacaaccaccttcttccttgttatgacgacgatgacaaggtcaccacatctgaaagtttccagagaatactgacacgt----ctc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
40181180 |
gatgatcaagaagaatacaaccaccttcttccttgttatgacgacgatgacaaggtcaccacatctgaaagtttccagagagtactgacacgtacgtctc |
40181081 |
T |
|
| Q |
113 |
agtgacgttcctgttttccgtgactataggtaccaaattaaatcagctatcaaattcatggactttgccactcctcgtcaccatcaacaacattttttac |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40181080 |
agtgacgttcctgttttccgtgactataggtacaaaattaaatcagctattgaattcatggactttgccactcctcgtcaccatcaacaacattttttac |
40180981 |
T |
|
| Q |
213 |
tcaaaattattaaaacctcttgtcaaactaaatttgttgaaacaccacctcataatcttatccgctttgtagagttggtttggaagaataataagaatct |
312 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40180980 |
tcaaagttattaaaacctcttgtcaaactaaatttgttgaaacaccaccttataatcttatccactttgtagaattggtttggaagaataataagaatct |
40180881 |
T |
|
| Q |
313 |
catcactacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40180880 |
catcactacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctg |
40180781 |
T |
|
| Q |
413 |
tggaacttgctgaagcatattggccactatcagaccggtattctt |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40180780 |
tggaacttgctgaagcatattggccactatcagaccggtattctt |
40180736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 38605462 - 38605414
Alignment:
| Q |
194 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaacta |
242 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
38605462 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaacta |
38605414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 194 - 342
Target Start/End: Original strand, 46358821 - 46358978
Alignment:
| Q |
194 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtag |
284 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || |
|
|
| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
285 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
342 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
| Q |
386 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
447 |
Q |
| |
|
|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
46359020 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
46359081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 44459253 - 44459420
Alignment:
| Q |
197 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
287 |
Q |
| |
|
|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
|
|
| T |
44459253 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44459352 |
T |
|
| Q |
288 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
355 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
44459353 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 44466786 - 44466953
Alignment:
| Q |
197 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
287 |
Q |
| |
|
|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
|
|
| T |
44466786 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44466885 |
T |
|
| Q |
288 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
355 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
44466886 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
309 |
atctcatcactacccctgttctggaatcccttgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
309 |
atctcatcactacccctgttctggaatcccttgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
| Q |
386 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
447 |
Q |
| |
|
|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44460211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
| Q |
386 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
447 |
Q |
| |
|
|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44467744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University