View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_11 (Length: 431)
Name: NF3101_low_11
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 3958556 - 3958148
Alignment:
| Q |
1 |
tctcatttaaagaagaaagttaaagataacctacaacttacgattacctttcacgtccttgtcctatagtcttaattttaatcaagaaggaaaaatcaag |
100 |
Q |
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| T |
3958556 |
tctcatttaaagaagaaagttaaagataacctacaacttacgattacctttcacgtcct------atagccttaattttaatcaagaaggaaaaatcaag |
3958463 |
T |
|
| Q |
101 |
aaacatatgtttgttataaaacggattaatttccattcacttgcgatcagttgcatatacagaattacacattgtgagctgagtttcatacatctacttt |
200 |
Q |
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| T |
3958462 |
aaacatttgtttgttataaaacagattaatttccattcatttgcaatcagttgcatatacagaattacgcattgtgagctgagtttcatacatctacttt |
3958363 |
T |
|
| Q |
201 |
tacaatcctcttatgttattcttctttaactgacttggatattggaaatgccgcaaccactgcatgaaactgcagaacaaaaaacaaatatatttcaatg |
300 |
Q |
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| T |
3958362 |
tacaatcctcttatgttattcttctttaactgacttggatattggagatgctgcaaccactgcatgaaactgcagaacaaaaaacaaatatatttcaatg |
3958263 |
T |
|
| Q |
301 |
gatattatttaggtctatgtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtg |
400 |
Q |
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| T |
3958262 |
gatattatttaggtctatgtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcatgtctacttacatcaaactatagacttctg |
3958163 |
T |
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| Q |
401 |
tgtaaatcaaattct |
415 |
Q |
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| T |
3958162 |
tgtaaatcaaattct |
3958148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 3998438 - 3998522
Alignment:
| Q |
331 |
taattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattct |
415 |
Q |
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| T |
3998438 |
taatgatagaaagtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattct |
3998522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 3958089 - 3958048
Alignment:
| Q |
374 |
ctacttacatcaaactatagacttgtgtgtaaatcaaattct |
415 |
Q |
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| T |
3958089 |
ctacttacatcaaactatggacttgtgtctaaatcaacttct |
3958048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Original strand, 4022623 - 4022668
Alignment:
| Q |
370 |
gtgtctacttacatcaaactatagacttgtgtgtaaatcaaattct |
415 |
Q |
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| T |
4022623 |
gtgtctacttacatcaatctatagacttgtgactaaatcaacttct |
4022668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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