View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_13 (Length: 388)
Name: NF3101_low_13
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 38259293 - 38258938
Alignment:
| Q |
17 |
aaagttgtatttcggatataacttataagagttgatnnnnnnnnnntc-tgtgcaacttaagcatttcataaatcttgccagtaagaaacattcctgagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38259293 |
aaagttgtatttcggatataacttataagagttgataaaaaaaaaaacctgtgcaacttaagcatttcataaatcttgccagtaagaaacattcctgagc |
38259194 |
T |
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| Q |
116 |
aatccaatctccaattgagtagacaactccacttattgccattttagctaaaactggatttgcttttaaagaatgctcgtatgcaatccaattgtgttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
38259193 |
aatccaatctccaattgagtagacaactccacttattgccattttagctaaaactggatttgcttttagagaatgctcgtatgcaattcaattgtgttca |
38259094 |
T |
|
| Q |
216 |
gacacatattttagtatctcataaagtgtccaaccctgcattacaagaccctattcagttttcaccttcttccatacatatacatgacataaaatacact |
315 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38259093 |
ggcacatattttagtatctcataaagtgtccaaccctgcattacaagaccctattcagttttcaccttcttccatacatatacgtgacataaaatacact |
38258994 |
T |
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| Q |
316 |
agattcatttcaaccattttctccatccgtctttttgtgtggttgtttgttttcct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38258993 |
agattcatttcaaccattttctccatccgtctttttgtgtggttgtttgttttcct |
38258938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 102 - 339
Target Start/End: Complemental strand, 38239047 - 38238814
Alignment:
| Q |
102 |
aaacattcctgagcaatccaatctccaattgagtagacaactccacttattgccattttagctaaaactggatttgcttttaaagaatgctcgtatgcaa |
201 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || |||| |
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| T |
38239047 |
aaacatacctgagcaatccaatctccaattgagtagacaactccacttattgccattttagctaaaactggatttgctttcagagattgctcataggcaa |
38238948 |
T |
|
| Q |
202 |
tccaattgtgttcagacacatattttagtatctcataaagtgtccaaccctgcattacaagaccctattcagttttcaccttcttccatacatatacatg |
301 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| | |||||| |||||||||| |||||||||| |||| |
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| T |
38238947 |
tccaattgtgttcaggcacatatttcagtatctcataaagtgtccaaccctgaattatgaaaccctaatcagttttcaacttcttccatt----tacaat |
38238852 |
T |
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| Q |
302 |
acataaaatacactagattcatttcaaccattttctcc |
339 |
Q |
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||| ||||||||||||||||| ||||||||| |||||| |
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| T |
38238851 |
acagaaaatacactagattcaattcaaccatcttctcc |
38238814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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