View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_14 (Length: 381)
Name: NF3101_low_14
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 10012907 - 10012545
Alignment:
| Q |
1 |
atcacttcaagatgtcttactctactcgtccactgcttcgtatcatggacacaccaccgcgccaacaccctctccttaatttgaacggacggtgagttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
10012907 |
atcacttcaagatgtcttactctactcgtccactgcttcgtaccatggccacaccaccgcgccaacaccctctccttaatttgaactgacagtgagttta |
10012808 |
T |
|
| Q |
101 |
acaaaatcacgatgtgccaccgtgattttgtcaaaagctacactttagacttcaacaaaataacgctgccaccatgattttgacaaatctaccgcgatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012807 |
acaaaatcacgatgtgccaccgtgattttgtcaaaagctacactttggacttcaacaaaataacgctgccaccatgattttgacaaatctaccgcgatag |
10012708 |
T |
|
| Q |
201 |
aaaatatgctcaaagttggattgcgtaaaagccacccgtcctaatttgattctttgatggtattcatgaaggcatttagccaattatgtgactcttccct |
300 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10012707 |
aaaatatgctccaagttggattgcataaaagccacccgtcctaatttgattctttgatggtattcatgaaggcatttagccaattatgtgactcttccct |
10012608 |
T |
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| Q |
301 |
tctccaatgaataaagttctctaccacatattacactcttctttccctccacaagaaagttat |
363 |
Q |
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| T |
10012607 |
tctccaatgaataaagttctctaccacatattacactcttctttccctccacaagaaagttat |
10012545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 10341268 - 10341311
Alignment:
| Q |
103 |
aaaatcacgatgtgccaccgtgattttgtcaaaagctacacttt |
146 |
Q |
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| T |
10341268 |
aaaatcacgatgtgccaccgtgattttgacaaaagctacacttt |
10341311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 6011275 - 6011216
Alignment:
| Q |
102 |
caaaatcacgatgtgccaccgtgattttgtcaaaagctacactttagacttcaacaaaat |
161 |
Q |
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|||||||| | ||| ||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
6011275 |
caaaatcatggtgtcccaccctgattttgtcaaaagctacagtttaagcttcaacaaaat |
6011216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 25719720 - 25719802
Alignment:
| Q |
105 |
aatcacgatgtgccaccgtgattttgtcaaaagctacactttaga-cttcaacaaaataacgctgccaccatgattttgacaaat |
188 |
Q |
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| T |
25719720 |
aatcacaatgagctaccgtgattttg--aaaagctacactttagagcttcaacaaaatcacggtaccatcatgattttggcaaat |
25719802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 44279118 - 44279082
Alignment:
| Q |
105 |
aatcacgatgtgccaccgtgattttgtcaaaagctac |
141 |
Q |
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||||||| |||||||||||||||||| |||||||||| |
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| T |
44279118 |
aatcacggtgtgccaccgtgattttgacaaaagctac |
44279082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 35027568 - 35027503
Alignment:
| Q |
123 |
tgattttgtcaaaagctacactttaga-cttcaacaaaataacgctgccaccatgattttgacaaa |
187 |
Q |
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|||||||| ||||||||||||| ||| |||||||||||| ||| | ||||| ||||||||||||| |
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| T |
35027568 |
tgattttgataaaagctacacttcagagcttcaacaaaattacggtaccaccttgattttgacaaa |
35027503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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