View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_15 (Length: 380)
Name: NF3101_low_15
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 71313 - 71622
Alignment:
| Q |
22 |
tcaacatcaacaagtttgttaatgaagacaacgaaaactctgtcttcatcagcagacttgtcagctacttctgaagaacttagtgagattattgagctac |
121 |
Q |
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| T |
71313 |
tcaacatcaacaagtctgttaatgaagacaacaaaaactctgtcttcatcagcagacttgtcagctacttctgaagaacttagtgagattattgagctac |
71412 |
T |
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| Q |
122 |
caactttggaaaacggttatgatgatgttgggaaagaggaatttgtctatgttgactcacaagcacaagactatgcttggatgatgtatcagcaaccaat |
221 |
Q |
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| T |
71413 |
caactttggaaaacggttatgatgatgttgggaaagaggaatttgtctatgttgactcacaagcacaagactatgcttggatgatgtatcagcaaccaat |
71512 |
T |
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| Q |
222 |
gacatggctacaaacaacacaagaagaagatggttgttgtgttggtgatgatggacttgttaataatggtgttgtaactagtttcgagagttttatgtgg |
321 |
Q |
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| T |
71513 |
gacatggctacaaacaacacaagaagaagatggttgttgtgttggtgatgatggacttgttaataatggtgttgtaactagtttcgagagttttatgtgg |
71612 |
T |
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| Q |
322 |
aattactagg |
331 |
Q |
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|||||||||| |
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| T |
71613 |
aattactagg |
71622 |
T |
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