View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3101_low_18 (Length: 349)
Name: NF3101_low_18
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 817674 - 818013
Alignment:
| Q |
1 |
caacaaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctgg |
100 |
Q |
| |
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||||||||||||||| || ||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
817674 |
caacaaatgtaatgtctggtctagttactgtgaggtaattaagtttgccgactagacgtcgatatctgccagggtctttcagtggctcccgctgacctgg |
817773 |
T |
|
| Q |
101 |
tagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagtaata |
200 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||||||||||| || ||||||| ||| |||||||||| ||||||||||||||| |||| | ||||||| |
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| T |
817774 |
tagtaacttaacgttgggatccataggagtgtcactaggtcggcaagcaagcaaaccagtttcctcaagaatatcaagagcatatcttcgttgagtaata |
817873 |
T |
|
| Q |
201 |
gccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttcaatt |
300 |
Q |
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||| | |||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
817874 |
gccactccagtcttggactgagcaacttcaatccccaagaaatagttcagtggacccaaatctttagtttgaaagtgaagggatagatgttgtttcaatt |
817973 |
T |
|
| Q |
301 |
gttggatgccagcctcatcattaccagtgatgatgatgtc |
340 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
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| T |
817974 |
gttggatgccagccttatcattaccagtgatgatgatgtc |
818013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 295
Target Start/End: Complemental strand, 3054696 - 3054558
Alignment:
| Q |
156 |
ccaatttcctcaagtatatcaagagcatattttcgctaagtaatagccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtc |
255 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||| | | |||||||||| |||| |||| ||| ||||||||||| | ||| ||| ||||| |||| | |
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|
| T |
3054696 |
ccaatttcctcaagaatgtcaggagcatatttttgatgagtaatagccacacctatcttagactaagcaacttcaacctgcaa-aaaaattttggtggcc |
3054598 |
T |
|
| Q |
256 |
ccaaatctttagtttgaaagtgaagggataaatgttgttt |
295 |
Q |
| |
|
||||||||| ||| |||||||| || || ||||||||||| |
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| T |
3054597 |
ccaaatcttgagtctgaaagtgtagagacaaatgttgttt |
3054558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 20592674 - 20592982
Alignment:
| Q |
1 |
caacaaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctgg |
100 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
20592674 |
caacaaatgtaatgtctggtctagttactgtggggtaattaagtttgctgactagacgtcgatatctgccagggtctttcagtggctccccctgacctgg |
20592773 |
T |
|
| Q |
101 |
tagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagtaata |
200 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||| |||||||||| | | |||||||||| ||||||||||||||| |||||| ||||||| |
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|
| T |
20592774 |
tagtaacttgacgttgggatccatagaagtgtcactaggtcggcaatcaagcaaactagtttcctcaagaatatcaagagcatatcttcgctgagtaata |
20592873 |
T |
|
| Q |
201 |
gccgcaccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttcaatt |
300 |
Q |
| |
|
||| | |||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
20592874 |
gccactccagtcttggactgagcaacttcaatccctaagaaatatttcagtggacccaaatctttagtttgaaagtgaagggatagatgttgtttcaact |
20592973 |
T |
|
| Q |
301 |
gttggatgc |
309 |
Q |
| |
|
||||||||| |
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|
| T |
20592974 |
gttggatgc |
20592982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 340
Target Start/End: Original strand, 22161093 - 22161428
Alignment:
| Q |
5 |
aaatgtaatgtatgttctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagt |
104 |
Q |
| |
|
||||||||||| | ||| |||||||||||| ||| |||||||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||| |
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|
| T |
22161093 |
aaatgtaatgtcttgtctagttactgtgaggaaattaagtttgccgactagacgtcgatatctgcctgggtctttcagtggctccccctgacctggtagt |
22161192 |
T |
|
| Q |
105 |
aacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagtaatagccg |
204 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||| |||||||||| ||| |||||||||| ||||||| ||||||| |||||| |||||||||| |
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|
| T |
22161193 |
aacttgacgttgggatccatagaagtgtcactaggtcggcaatcaagcaaaccagtttcctcaagaatatcaaaagcatatcttcgctgagtaatagcca |
22161292 |
T |
|
| Q |
205 |
caccagtcttggaccgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttcaattgttg |
304 |
Q |
| |
|
| |||||||| ||| || ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||| |
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|
| T |
22161293 |
ctccagtcttagactgaacaacttcaatccccaagaaatatttcagtggacccaaatctttagtttgaaactgaagggatagatgttgtttcaactgttg |
22161392 |
T |
|
| Q |
305 |
gatgccagcctcatcattaccagtgatgatgatgtc |
340 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||| |
|
|
| T |
22161393 |
gatgtcagccttatcattaccaaagatgatgatgtc |
22161428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 24181831 - 24182151
Alignment:
| Q |
20 |
tctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttagga |
119 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||| | |||||| | | | |||||| |||||||||||| ||| ||| |||||||||||| || ||| |
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|
| T |
24181831 |
tctggttagtatgaggtaattaagtttgccgactagactccgatatttgctaaggtcttccaatggctcccc-tgatctgatagtaacttgacattggga |
24181929 |
T |
|
| Q |
120 |
tccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaagagcatattttcgctaagtaatagccgcaccagtctt-ggac |
218 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||| ||| |||| |||| |
|
|
| T |
24181930 |
tccataggagtgacactaggtcgacaatcaagcaagcaaatttcctcaagtatattaagagcatatcttcgctgagcaatagccacacatatctttggac |
24182029 |
T |
|
| Q |
219 |
cgagcaacttcaatccccaagaaatattttagtggtcccaaatctttagtttgaaagtgaagggataaatgttgtttcaattgttggatgccagcctcat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| | ||||||| || ||||||||||||| || || |
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|
| T |
24182030 |
tgagcaacttcaatccccaagaaatattttagtggtcctaaatctttagtttaaaagtgaaatgatagacgttgttttaactgttggatgccagtcttat |
24182129 |
T |
|
| Q |
319 |
cattaccagtgatgatgatgtc |
340 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
24182130 |
cattaccagtgatgatgttgtc |
24182151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 30665967 - 30665813
Alignment:
| Q |
63 |
tatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggatccagaggagtgtcactaggtcggaaatcaagcaagccaattt |
162 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
30665967 |
tatctgccagggtctttcagtggctccccctgacttggcagtaacttgacgttgggatccataggagtgtcactaggtcggcaatcaagcaagccagttt |
30665868 |
T |
|
| Q |
163 |
cctcaag----tatatcaagagcatattttcgctaagtaatagccgcaccagtct |
213 |
Q |
| |
|
| ||||| | ||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
30665867 |
cttcaagtgtatctatcaagagcatattttcgctgagtaatagccacaccagtct |
30665813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 34611235 - 34611077
Alignment:
| Q |
21 |
ctggttactgtgaggtaataaagtttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggat |
120 |
Q |
| |
|
||||| ||||||||||||| |||||| || |||| ||||||||| |||||||| ||||| |||||||| |||||| |||||| | |||| || |||| |
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|
| T |
34611235 |
ctggtcactgtgaggtaattaagttttccaactagacgtcgatattgaccagggtcgttcaaaggctccccttgacctagtagtagcctgaccttgggat |
34611136 |
T |
|
| Q |
121 |
ccagaggagtgtcactaggtcggaaatcaagcaagccaatttcctcaagtatatcaaga |
179 |
Q |
| |
|
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
34611135 |
ccataggagtgtcactgggtcaacaatcaagcaagccagtttcctcaagtatatcaaga |
34611077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 21501050 - 21501116
Alignment:
| Q |
45 |
ttgccgactaagcgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttga |
111 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
21501050 |
ttgccgacaaaacgtcgataactgccagggtctttcagtggttccccctgacctggtagtaacttga |
21501116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 9187632 - 9187550
Alignment:
| Q |
57 |
cgtcgatatctcccagggtctttcaatggctccccctgacctggtagtaacttgacgttaggatccagaggagtgtcactagg |
139 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| ||| || || | |||||| || ||||||| | |||||||| |||| |
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|
| T |
9187632 |
cgtcgatatcttcccgggtctttcaatggctccccctaacccggaagaagcttgacatttggatccatatgagtgtcaatagg |
9187550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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