View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_25 (Length: 262)
Name: NF3101_low_25
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 6118422 - 6118656
Alignment:
| Q |
17 |
caattcaatcattaaaaacaccaatttcataataataaaaatcattacctcaaaaccacgtatacttctcccacaaagcggaagatcttgttctcatact |
116 |
Q |
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| T |
6118422 |
caattcaatcattaaaaacaccaatttcataataataaaaatcattacctcaaaaccacgtatacttctcccacaaagcggaagatcttgttctcatact |
6118521 |
T |
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| Q |
117 |
ttcttgttcttgttcttttgttgtttccttctaaacatgcaagagaaaacatatgagatgccatatcatatatacatgcaaacactcccatataattata |
216 |
Q |
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| T |
6118522 |
ttcttgttcttgttcttttgttgtttccttctaaacatgcaagagaaaacatatgagatgccatatcatatatacatgcaaacactcccatataattata |
6118621 |
T |
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| Q |
217 |
ttctaacaaatttaaactgtagcccctttcttcat |
251 |
Q |
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| T |
6118622 |
ttctaacaaatttaaactgtagcccctttcttcat |
6118656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 6123083 - 6123248
Alignment:
| Q |
17 |
caattcaatcattaaaaacaccaatttcataataataaaaatcattacctcaaaaccacgtatacttctcccacaaagcggaagatcttgttctcatact |
116 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6123083 |
caattcaatcattaaaaagaccaatttcataacaataaaaattattacctcaaaaccacgtatacttctcccacaaagaggaagatcttgttctcatact |
6123182 |
T |
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| Q |
117 |
ttcttgttcttgttcttttgttgtttccttctaaacatgcaagagaaaacatatgagatgccatat |
182 |
Q |
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| T |
6123183 |
ttcttgttcttgttcttttgttgtttccttctaaacatgcatgagaaaacatatgagatgccatat |
6123248 |
T |
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