View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3101_low_26 (Length: 248)

Name: NF3101_low_26
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3101_low_26
NF3101_low_26
[»] chr1 (7 HSPs)
chr1 (8-232)||(49292581-49292805)
chr1 (132-209)||(24516448-24516525)
chr1 (19-63)||(6242222-6242266)
chr1 (159-211)||(9210073-9210125)
chr1 (145-209)||(26803154-26803218)
chr1 (132-218)||(40110577-40110663)
chr1 (157-218)||(51217723-51217784)
[»] scaffold0046 (1 HSPs)
scaffold0046 (18-62)||(23922-23966)
[»] chr4 (8 HSPs)
chr4 (145-213)||(43418143-43418211)
chr4 (144-213)||(7989373-7989442)
chr4 (18-63)||(43894625-43894670)
chr4 (132-218)||(28655678-28655764)
chr4 (132-218)||(46795951-46796037)
chr4 (23-63)||(7989227-7989267)
chr4 (145-212)||(28103424-28103491)
chr4 (145-212)||(31711203-31711270)
[»] scaffold0084 (2 HSPs)
scaffold0084 (18-61)||(12755-12798)
scaffold0084 (157-218)||(11811-11872)
[»] chr5 (4 HSPs)
chr5 (132-218)||(8188125-8188211)
chr5 (157-218)||(1273194-1273255)
chr5 (145-218)||(12829675-12829748)
chr5 (145-218)||(12861654-12861727)
[»] chr3 (10 HSPs)
chr3 (159-213)||(7921595-7921649)
chr3 (132-218)||(31281077-31281163)
chr3 (132-218)||(55425527-55425613)
chr3 (132-213)||(32980377-32980458)
chr3 (157-213)||(8372566-8372622)
chr3 (157-208)||(45422115-45422166)
chr3 (157-218)||(17345415-17345476)
chr3 (18-63)||(25609286-25609331)
chr3 (145-213)||(26797429-26797497)
chr3 (145-213)||(48253043-48253111)
[»] chr8 (5 HSPs)
chr8 (157-218)||(16362524-16362585)
chr8 (132-213)||(36939958-36940039)
chr8 (132-218)||(22621059-22621145)
chr8 (145-202)||(37473974-37474031)
chr8 (145-213)||(38790191-38790259)
[»] chr7 (4 HSPs)
chr7 (145-218)||(35483679-35483752)
chr7 (132-213)||(17288167-17288248)
chr7 (157-210)||(25532257-25532310)
chr7 (19-63)||(40739064-40739108)
[»] chr2 (3 HSPs)
chr2 (145-218)||(4830613-4830686)
chr2 (145-212)||(3533564-3533631)
chr2 (145-212)||(7038278-7038345)
[»] chr6 (1 HSPs)
chr6 (19-63)||(29466269-29466313)
[»] scaffold1550 (1 HSPs)
scaffold1550 (25-63)||(451-489)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 49292805 - 49292581
Alignment:
Q  8 gagatgaagtgatgaagattgagtttttaaaaacataatttaagtttttaatttttctcataaagatggtacgaagatgaagaagaataagggaagaata 107  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49292805 gagaagaagtgatgaagattgagttttttaaaacataatttaagtttttaatttttctcataaagatggtacgaagatgaagaagaataagggaagaata 49292706  T
Q  108 tgaagnnnnnnnnnggtgttggcgggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagacta 207  Q
    |||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49292705 tgaagaaaaaaaaaggtgttggcgggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagacta 49292606  T
Q  208 acggagtggacgaatatgatcaacg 232  Q
    ||||||||||| |||||||||||||    
T  49292605 acggagtggacaaatatgatcaacg 49292581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 24516525 - 24516448
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaac 209  Q
    |||||||| ||  ||||||||||  ||||||||||||||| ||| |||||||||||| ||| ||| ||||| ||||||    
T  24516525 ggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaac 24516448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 6242222 - 6242266
Alignment:
Q  19 atgaagattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    |||||||||||||||||||||||||||||| |||||  |||||||    
T  6242222 atgaagattgagtttttaaaaacataatttgagtttaaaattttt 6242266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 9210073 - 9210125
Alignment:
Q  159 caatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacgg 211  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||| ||||||||    
T  9210073 caatcaaatggttgaaattatatcaagaatataagacattaaaaaactaacgg 9210125  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 26803154 - 26803218
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaac 209  Q
    ||||||||||  ||||||||||||||| ||| |||||||||||| ||| ||| ||||| ||||||    
T  26803154 atacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaatactaac 26803218  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 40110577 - 40110663
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||| ||  ||||||||||  ||||||||||||||| ||| |||||||| ||| ||| ||| ||||| |||||| ||| ||||    
T  40110577 ggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaacagagaggac 40110663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 51217784 - 51217723
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| |||||||||||  ||||||| |||||||| || ||||| |||||||||| ||||    
T  51217784 tgcaatctaatggttgaaattatatcaaaaatattagtcattaaaaaactaacggagaggac 51217723  T

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Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 23966 - 23922
Alignment:
Q  18 gatgaagattgagtttttaaaaacataatttaagtttttaatttt 62  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  23966 gatgaagattgagtttttaaaaacataatttcagtttttaatttt 23922  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 43418211 - 43418143
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    |||| ||||| |||||||||||||||||||| || ||||| ||||||||||| ||||| ||||||||||    
T  43418211 atacgatggacttgcaatcaaatggttgaaatcaaatcaaaaatattagacattaaaatactaacggag 43418143  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 7989373 - 7989442
Alignment:
Q  144 catacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||  |  ||||| ||||||||||    
T  7989373 catacaatggacttgcaatcaaatgactgaaaccatatcaagaatattaagcgttaaaaaactaacggag 7989442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 43894670 - 43894625
Alignment:
Q  18 gatgaagattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||    
T  43894670 gatgaagattgagtttttaaaaacataatttcagtttttatttttt 43894625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 28655764 - 28655678
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||| || ||||||||||  |||||||| ||||| ||||| |||||| |  ||||||| || ||||| |||||||||||||||    
T  28655764 ggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatctaagatattaggcattaaaaaactaacggagtggac 28655678  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 46795951 - 46796037
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| |||  ||||||||||  ||||||||||||||| ||| |||||||| ||  ||||||| ||||| |||||||||| ||||    
T  46795951 ggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 46796037  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 7989227 - 7989267
Alignment:
Q  23 agattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  7989227 agattgagtttttaaaaacataatttgagattttaattttt 7989267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 28103424 - 28103491
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacgga 212  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||| || ||| ||||| || ||||||    
T  28103424 atacaatggacttgcaatcgaatggttgaaacaatatcaaaaatagtaaacattaaaaaacaaacgga 28103491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 31711270 - 31711203
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacgga 212  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||| || ||| ||||| || ||||||    
T  31711270 atacaatggacttgcaatcgaatggttgaaacaatatcaaaaatagtaaacattaaaaaacaaacgga 31711203  T

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Target: scaffold0084 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 12755 - 12798
Alignment:
Q  18 gatgaagattgagtttttaaaaacataatttaagtttttaattt 61  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  12755 gatgaagattgagtttttaaaaacataatttcagtttttaattt 12798  T

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Target: scaffold0084; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 11872 - 11811
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| ||||||| ||| || ||||| ||||||||||| ||||| |||||||||| ||||    
T  11872 tgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggagaggac 11811  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 8188125 - 8188211
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||||||  ||| ||||||  ||||||||||||||| ||| |||||||  ||| ||||||| ||||| |||||||||| ||||    
T  8188125 ggttcaccattaaatataatggacatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggagaggac 8188211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 1273255 - 1273194
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| ||||||||||| |||||||| ||||||| ||| ||||| |||||||||| ||||    
T  1273255 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggggac 1273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 12829748 - 12829675
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||| |||||||||||||||||  ||||||| || ||||| ||||||||| | ||||| |||||| ||| ||||    
T  12829748 atacgatggatttgcaatcaaacagttgaaatcaaatcaaaaatattagatattaaaatactaacagagaggac 12829675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 12861727 - 12861654
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||| |||||||||||||||||  ||||||| || ||||| ||||||||| | ||||| |||||| ||| ||||    
T  12861727 atacgatggatttgcaatcaaacagttgaaatcaaatcaaaaatattagatattaaaatactaacagagaggac 12861654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 7921595 - 7921649
Alignment:
Q  159 caatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||||||    
T  7921595 caatcgaatggttgaaatcatatcaaaaatattagacattaaaaaactaacggag 7921649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 31281163 - 31281077
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||| || ||||||||||  |||||||| ||||| ||||| |||||  |  |||||||||| ||||| |||||||||||||||    
T  31281163 ggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatttaagatattagacattaaaaaactaacggagtggac 31281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 55425527 - 55425613
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||| || ||||||||||  |||||||| ||||| ||||| |||||  |  |||||||||| ||||| |||||||||||||||    
T  55425527 ggttcaccgttacatacaatggtcttgcaatctaatggctgaaatcatatttaagatattagacattaaaaaactaacggagtggac 55425613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 32980377 - 32980458
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||| |||| ||| ||||||  ||||||| ||||||||||| |||||||| ||| ||||| | ||||| ||||||||||    
T  32980377 ggttcactattgtatataatggacctgcaatcgaatggttgaaatcatatcaaaaatgttagaaattaaaaaactaacggag 32980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 8372566 - 8372622
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||| ||||||||||| |||||||| ||||||| ||| ||||| ||||||||||    
T  8372566 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggag 8372622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 45422115 - 45422166
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaa 208  Q
    ||||||||||||||| | | |||||||||||||||||||| ||||| |||||    
T  45422115 tgcaatcaaatggttaatatcatatcaagaatattagacattaaaaaactaa 45422166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 17345476 - 17345415
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| ||||||| ||| ||||| || ||||||||||| ||||| |||||||||| ||||    
T  17345476 tgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggac 17345415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 25609331 - 25609286
Alignment:
Q  18 gatgaagattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    |||||||||||| ||||||||||||||||   ||||||||||||||    
T  25609331 gatgaagattgattttttaaaaacataatacgagtttttaattttt 25609286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 26797497 - 26797429
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||||||  |||||||||||||||||||  ||||||| |||||||  || || || ||||||||||    
T  26797497 atacaatggacctgcaatcaaatggttgaaattatatcaaaaatattaatcattagaaaactaacggag 26797429  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 48253111 - 48253043
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||||||  ||||||||||||||| ||| || ||||| ||  ||||||| ||||| ||||||||||    
T  48253111 atacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggag 48253043  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 16362585 - 16362524
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||||| ||||    
T  16362585 tgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggac 16362524  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 36939958 - 36940039
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||| |||  ||||||||||  ||||||| |||||||||||||||||||| | ||||||| | ||||| | ||||||||    
T  36939958 ggttcactattatatacaatggacctgcaatcgaatggttgaaaccatatcaaaattattagatattaaaaaattaacggag 36940039  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 22621059 - 22621145
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||||||| ||  ||||||||||  |||||||||||| || ||| |||||||||||| ||| ||| ||||| |||||| ||| ||||    
T  22621059 ggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaacagagaggac 22621145  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 37473974 - 37474031
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaa 202  Q
    ||||||||||| ||||||| ||||||  |||| ||||||| ||||||||||| |||||    
T  37473974 atacaatggatctgcaatcgaatggtcaaaacaatatcaaaaatattagacattaaaa 37474031  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 38790191 - 38790259
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||||||| |||||||  |||||||||  |||||||| | ||||||||| ||||| | ||||||||    
T  38790191 atacaatggatctgcaatcggatggttgaagtcatatcaacattattagacattaaaaaattaacggag 38790259  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 35483752 - 35483679
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    |||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| | ||| |||||||||| ||||    
T  35483752 atacgatggacttgcaatcaaacggttgaaatcaaatcaaaaatattagacatttaaatactaacggagaggac 35483679  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 17288167 - 17288248
Alignment:
Q  132 ggttcaccattgcatacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggag 213  Q
    ||||||| |||  ||||||||||  ||||||||||| ||| ||| |||||||| ||  ||||||| ||||| ||||||||||    
T  17288167 ggttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 17288248  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 25532310 - 25532257
Alignment:
Q  157 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacg 210  Q
    ||||||| ||||||||||| |||||||| ||||||| ||| ||||| |||||||    
T  25532310 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 40739108 - 40739064
Alignment:
Q  19 atgaagattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    |||||||||| ||||||||||||||||||| | |||| |||||||    
T  40739108 atgaagattgggtttttaaaaacataatttgaattttaaattttt 40739064  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 4830613 - 4830686
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 218  Q
    ||||||||||  | ||||| ||||||||||| |||||||| ||||||||||| | ||| |||||||||| ||||    
T  4830613 atacaatggacctacaatcgaatggttgaaatcatatcaaaaatattagacattcaaaaactaacggagaggac 4830686  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 3533564 - 3533631
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacgga 212  Q
    ||||||||||| |||||||||| |||||||| |||||||| ||  ||| ||| ||||| |||||||||    
T  3533564 atacaatggatctgcaatcaaacggttgaaatcatatcaaaaaacttaaacattaaaatactaacgga 3533631  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 7038278 - 7038345
Alignment:
Q  145 atacaatggatttgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacgga 212  Q
    |||||||||| |||||||| |||||||||||| ||||||| |||| || ||| ||||| || ||||||    
T  7038278 atacaatggacttgcaatcgaatggttgaaacaatatcaaaaatagtaaacattaaaaaacaaacgga 7038345  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 29466313 - 29466269
Alignment:
Q  19 atgaagattgagtttttaaaaacataatttaagtttttaattttt 63  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||    
T  29466313 atgaagattgggtttttaaaaacataatttgagttttaaattttt 29466269  T

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Target: scaffold1550 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1550
Description:

Target: scaffold1550; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 489 - 451
Alignment:
Q  25 attgagtttttaaaaacataatttaagtttttaattttt 63  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  489 attgagtttttaaaagcataatttaagttttaaattttt 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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