View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_4 (Length: 622)
Name: NF3101_low_4
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 13 - 605
Target Start/End: Complemental strand, 4568761 - 4568184
Alignment:
| Q |
13 |
aatatacgtagactagtaaagccatcactacctgctggatattggggaaatggttgtgttccaatgtatgttcaattgagtgctaaagatttgatagaac |
112 |
Q |
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| T |
4568761 |
aatatacgtagactagtaaagccatcactacctgctggatattggggaaatggttgtgttccaatgtatgttcaattgagtgctaaagatttgatagaac |
4568662 |
T |
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| Q |
113 |
aacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatattcgctctttcattgattatcaacatttgcattatgc |
212 |
Q |
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| T |
4568661 |
aacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatgttcgctctttcattgattatcaacatttgcattatgc |
4568562 |
T |
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| Q |
213 |
tgatgggatcacagcaggaaaatgggtgagtggtttcactgattggagacacttaggccattcaactgtggattttggttgaggaggtcctgttactgtt |
312 |
Q |
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| T |
4568561 |
tgatgggatcacagcaggaaaatgggtgagtggtttcactgattggagacacttgggccattcaactgtggattttggttggggaggtcctgttactgtt |
4568462 |
T |
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| Q |
313 |
ttgccacttggtagaaacctgcttgggagtgttgaaccttgttactttttgccttattcaatagccagtgctgacaaaaagaatgggtttaaggttttgg |
412 |
Q |
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| T |
4568461 |
ttgccacttggtagaaacctgcttgggagtgttgaaccttgttactttttgccttattcaatagccagtgctgacaaaaagaatgggtttaaggttttgg |
4568362 |
T |
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| Q |
413 |
tgaatttgagtgaggtagctttgcctgcttttagagaagatatgcaaatgtttgctggtagtcgagagttgttacccgagtctcgcatttgacgatatta |
512 |
Q |
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| T |
4568361 |
tgaatttgagtgaggtagctttgcctgcttttacagaagatatgcaaatgtttgctggtagtcgagagttgttacccgagtctcgcatttgacaatatta |
4568262 |
T |
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| Q |
513 |
acagaataaaagagtaatattgaaaaaagagtgttcgtaatattatttttatggtactagttcttgattttatgtaaacaagtaaaggcgagt |
605 |
Q |
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| T |
4568261 |
acagaataaaagag------tgaaa---------tcgtaatattatttttatgatactagttcttgattttatgtaaacaagtaaaggcgagt |
4568184 |
T |
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