View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_5 (Length: 562)
Name: NF3101_low_5
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Original strand, 55337065 - 55337457
Alignment:
| Q |
12 |
tattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacatttcctctttttgaagacaagaaagaaaaagaagaagttgaggtgtg |
111 |
Q |
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| T |
55337065 |
tattcttaggaagtaaagaattgggtcttgggaaatggattgaggcattcacattacctctttttgaagacaagaaagaaaaagaagaagttgaggtgtg |
55337164 |
T |
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| Q |
112 |
catggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtttatatatatactatactatt |
211 |
Q |
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| T |
55337165 |
catggaagccatgaaaatgaaatgattgtacgtatgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtttatata-----tatactatt |
55337259 |
T |
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| Q |
212 |
gtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttaagac-aagagttatgggaggtattaaacaaataggttcttagatac |
310 |
Q |
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| T |
55337260 |
gtgacagggaggatgagtgcaacttgtaatgttatagttttattcaattttttagtacaaagagttatgggaggtattaaacaaataggttcttagatac |
55337359 |
T |
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| Q |
311 |
ctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
408 |
Q |
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| T |
55337360 |
ctatggaccaaatgtaggaatatttgtatacacacaataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 457 - 542
Target Start/End: Original strand, 55337473 - 55337558
Alignment:
| Q |
457 |
aaattaatagacaataattcaagatgttataagaaattaaaacaattttcccaggttataaaacttgttcacaattgcaaagacaa |
542 |
Q |
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| T |
55337473 |
aaattaatagacaataattcaagatgttatacgaaattaaaacaattttcccaggttataaaacttgttcacaattgcaaagacaa |
55337558 |
T |
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