View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_8 (Length: 490)
Name: NF3101_low_8
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 39967139 - 39967302
Alignment:
| Q |
19 |
ggtccaactgctttgactgttatataggggtctcagtacagaggataccccacatgtctcaattgtccaatctagaactagaagatgctcgctctataca |
118 |
Q |
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| T |
39967139 |
ggtccaactgctttgactgttatataggggtctcagtacagaggataccccacatgtctctattgtccaatctagaactagaagatgctcgctgtataca |
39967238 |
T |
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| Q |
119 |
aaatttttgacatttgaaacaatagagatt----agtgaggtccaaaggcctaatataataata |
178 |
Q |
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| T |
39967239 |
aaacttttgacatttgaaacaatagagattagtgagtgaggtccaaaggcctaatataataata |
39967302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 43432549 - 43432488
Alignment:
| Q |
357 |
ttttcaggtgttaaattatacataatattccttaactacgatttgtgttcaaatatacactt |
418 |
Q |
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| T |
43432549 |
ttttcaggtgttcaaatatacatgatattcattaaccacgatgtatgttcaaatatacactt |
43432488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 8309642 - 8309700
Alignment:
| Q |
372 |
ttatacataatattccttaactacgatttgtgttcaaatatacacttcaaaattatggt |
430 |
Q |
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| T |
8309642 |
ttatatatgatattcattaactacgatttgtattcaaacatacacttgaaaatcatggt |
8309700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 3290054 - 3290002
Alignment:
| Q |
364 |
gtgttaaattatacataatattccttaactacgatttgtgttcaaatatacac |
416 |
Q |
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| T |
3290054 |
gtgttcaaatatacatgatattcgttaactacgctttatgttcaaatatacac |
3290002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 7757512 - 7757569
Alignment:
| Q |
367 |
ttaaattatacataatattccttaactacgatttgtgttcaaatatacacttcaaaat |
424 |
Q |
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| T |
7757512 |
ttaaaatatacatgatattcattaactacgatttgtgttcaaatatacacttaaaaat |
7757569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Complemental strand, 39709997 - 39709962
Alignment:
| Q |
432 |
ggaaggaggaacttgaaccctcaacctcagccttgg |
467 |
Q |
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| T |
39709997 |
ggaaggagggacttgaaccctcaacctcagccttgg |
39709962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 26866656 - 26866730
Alignment:
| Q |
356 |
attttcaggtgttaaattatacataatattccttaactacgatttgtgttcaaatatacacttcaaaattatggt |
430 |
Q |
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| T |
26866656 |
attttcaggtgttcaaatatacatgatattcattaaccacaatttgtgttcatgtataaactgaaaaattatggt |
26866730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 39259290 - 39259348
Alignment:
| Q |
372 |
ttatacataatattccttaactacgatttgtgttcaaatatacacttcaaaattatggt |
430 |
Q |
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| T |
39259290 |
ttatacataatattcattaaccacaatttgtgtttaaatatatacttaaaaattgtggt |
39259348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 11792217 - 11792278
Alignment:
| Q |
357 |
ttttcaggtgttaaattatacataatattccttaactacgatttgtgttcaaatatacactt |
418 |
Q |
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| T |
11792217 |
ttttcaggtgttcaaatatacatgatattcattgatcacaatttgtgttcaaatatacactt |
11792278 |
T |
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