View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3101_low_9 (Length: 478)
Name: NF3101_low_9
Description: NF3101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3101_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 241 - 461
Target Start/End: Original strand, 39386384 - 39386606
Alignment:
| Q |
241 |
atgttactttcttaataccttaatataaacatcaacatgcaaaaagtaatgaattagataacaactctgtagaaagttcaaaatgatcttgaaaatgttg |
340 |
Q |
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| T |
39386384 |
atgttactttcttaataccttaatataaacatcaacatgcaaaaagtaatgaattagataacaaccctgtagaaagttcaaaatgatcttgaaaatgttg |
39386483 |
T |
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| Q |
341 |
tagttgcagctagccaggttcaagaataactcaacaatgaagccaagatatttcaatggataagcaaacaaatgaagcaacttttgtaacaatatcgata |
440 |
Q |
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| T |
39386484 |
tagttgcagctagccaggttcaagaataactcaacaatgaagccaagatatttcaatggataagcaaacaaatgaagtaacttttgtaataatatcgaca |
39386583 |
T |
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| Q |
441 |
gaagaaa--gagatacttgtatt |
461 |
Q |
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| T |
39386584 |
gaagaaattgagatacttgtatt |
39386606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 39386164 - 39386332
Alignment:
| Q |
1 |
tccaacgattttcaactgtgtcccgtataaaagcttcattctcgtaagacactttagaagccatcatagacaaagcaacattatatttagggtcttcacc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39386164 |
tccaacgattttcaaccgtgtcccgtataaaagcttcattctcgtaagacactttagaagccatcatagacaaagcaacattatatttagggtcttcacc |
39386263 |
T |
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| Q |
101 |
tttgatgcttttgtccaactccactcgcttgtccatgtgaccaataatagacacaaaatctgctgaatt |
169 |
Q |
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| T |
39386264 |
tttgatgcttttgtccaactccactcgcttgtccatatgaccaataatagacacaaaatctgctgaatt |
39386332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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