View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103-INSERTION-11 (Length: 663)

Name: NF3103-INSERTION-11
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103-INSERTION-11
NF3103-INSERTION-11
[»] chr7 (4 HSPs)
chr7 (8-663)||(37444514-37445188)
chr7 (579-619)||(9483385-9483425)
chr7 (432-507)||(34943575-34943649)
chr7 (315-382)||(34943480-34943545)
[»] chr3 (3 HSPs)
chr3 (565-625)||(51497977-51498037)
chr3 (565-614)||(51733131-51733180)
chr3 (567-619)||(26643296-26643348)
[»] chr2 (3 HSPs)
chr2 (567-627)||(41047863-41047923)
chr2 (567-619)||(6736479-6736531)
chr2 (586-626)||(41508544-41508584)
[»] chr1 (2 HSPs)
chr1 (567-619)||(3523380-3523433)
chr1 (567-619)||(21057772-21057824)
[»] chr5 (3 HSPs)
chr5 (567-619)||(4206315-4206367)
chr5 (586-627)||(1375921-1375962)
chr5 (586-619)||(35972048-35972081)
[»] chr4 (1 HSPs)
chr4 (567-619)||(43093543-43093595)
[»] scaffold0024 (1 HSPs)
scaffold0024 (565-619)||(151418-151472)
[»] chr8 (2 HSPs)
chr8 (572-626)||(10170397-10170451)
chr8 (567-619)||(14227211-14227263)
[»] chr6 (1 HSPs)
chr6 (587-619)||(32694776-32694808)


Alignment Details
Target: chr7 (Bit Score: 543; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Original strand, 37444514 - 37445188
Alignment:
Q  8 attccgtgtgtgcataagtactataggcttggccttgtgaacgtacaaaaatagctctttcaatacatgcataaacaaatacacacatgaagaatgttaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37444514 attccgtgtgtgcataagtactataggcttggccttgtgaacatacaaaaatagctctttcaatacatgcataaacaaatacacacatgaagaatgttaa 37444613  T
Q  108 ttaataacatat--------------------atagtctttagtgattgtttatttcataaaatatcaacaaatttttgaaaagtgatcaaattttcaat 187  Q
    ||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37444614 ttaataacatattaacatacatttttaataacatagtctttagtgattgtttatttcataaaatatcaacaaatttttgaaaagtgatcaaattttcaat 37444713  T
Q  188 gaaactggtgggatttttaaaagttatgtccgggcattctcaattacaagacatccgcacgaagcggaattatcgttatgataccatttcttaaaagttt 287  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  37444714 gaaactggtgggatttttaaaagttatgtctaggcattcttaattacaagacatccgcacgaagcggaattagcgttatgataccacttcttaaaagttt 37444813  T
Q  288 aagagtttcgagaacaacatcttctttaaaggattcatacttcagtgacatcaatgacaaagaaaagcaaagaaatttgcaataatagtaggacttgaat 387  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37444814 aagagtttcgcgaacaacatcttcttaaaaggattcatacttcaatgacatcaatgacaaagaaaagcaaagaaatttgcaataatagtaggacttgaat 37444913  T
Q  388 aaacaaagagtagccaatttaccctatgcctgcactgatagagtgaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaat 487  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37444914 aaacaaagtatagccaatttaccctatgcctgcactgatagagtgaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaat 37445013  T
Q  488 ttctacttatgacatttgcacgcccggatttgtcgtaagttctaatctatgaaatgaaatatactcgagcggacacaatactgacacgtctacaccgata 587  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||    
T  37445014 ttctacttatgacatttgcacg-ccggatttgtcgtaagttctaatctatgaaatgaaatatactcgagcggacacaataatgacacgtctacacttata 37445112  T
Q  588 ataatttgataaaatagaataattgaatgtaaatacatgttacaatgtcatttcagaattgtacatttaacatata 663  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37445113 ataatttgacaaaatagaataattgaatgtaaatacatgttacaatgtcatttcagaattgtacatttaacatata 37445188  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 579 - 619
Target Start/End: Original strand, 9483385 - 9483425
Alignment:
Q  579 acaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  9483385 acaccaataataatttgagaaaatagaataattgaatgtaa 9483425  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 432 - 507
Target Start/End: Original strand, 34943575 - 34943649
Alignment:
Q  432 gaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaatttctacttatgacatttgca 507  Q
    ||||| |||||| ||||||||||||||  ||||||||| || ||||| || ||||||||| ||||| |||||||||    
T  34943575 gaaaaggagaag-gggtccatgtctatgacataaatgttgtgaagaaatctttaatttcttcttataacatttgca 34943649  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 34943480 - 34943545
Alignment:
Q  315 aaaggattcatacttcagtgacatcaatgacaaagaaaagcaaagaaatttgcaataatagtaggact 382  Q
    ||||||||||| ||||| |||||  |||||||||||| |||||||  |||||||||| | ||||||||    
T  34943480 aaaggattcatgcttcaatgacaataatgacaaagaagagcaaag--atttgcaatactggtaggact 34943545  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 565 - 625
Target Start/End: Original strand, 51497977 - 51498037
Alignment:
Q  565 atactgacacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacat 625  Q
    ||||||||||||| ||||   |||||||||||||||||||||||||||||||||| |||||    
T  51497977 atactgacacgtccacactagtaataatttgataaaatagaataattgaatgtaactacat 51498037  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 51733131 - 51733180
Alignment:
Q  565 atactgacacgtctacaccgataataatttgataaaatagaataattgaa 614  Q
    ||||||||| ||  ||||||||||||| |||| |||||||||||||||||    
T  51733131 atactgacaggttgacaccgataataacttgagaaaatagaataattgaa 51733180  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 619
Target Start/End: Complemental strand, 26643348 - 26643296
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| | || | ||||||||| | ||||||||||||||||||||||    
T  26643348 actgacacgtcgatactggtaataatttaagaaaatagaataattgaatgtaa 26643296  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 627
Target Start/End: Original strand, 41047863 - 41047923
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacatgt 627  Q
    ||||||||||| |||| ||||||||||||| ||| | ||||||||||||||||| ||||||    
T  41047863 actgacacgtcgacactgataataatttgaaaaagtggaataattgaatgtaaacacatgt 41047923  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 6736479 - 6736531
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| |||||| ||||||||||| || || ||||||||||||||||    
T  6736479 actgacacgtcgacaccggtaataatttgagaatatggaataattgaatgtaa 6736531  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 626
Target Start/End: Original strand, 41508544 - 41508584
Alignment:
Q  586 taataatttgataaaatagaataattgaatgtaaatacatg 626  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  41508544 taataatttgagaaaatagaataattgaatgtaactacatg 41508584  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 3523380 - 3523433
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaa-taattgaatgtaa 619  Q
    ||||||||||  |||||||||||||||||||||||||||| | |||||||||||    
T  3523380 actgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 21057772 - 21057824
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| |||||| ||||||||| | ||||||  ||||||||||||||    
T  21057772 actgacacgtcgacaccgctaataattttagaaaataacataattgaatgtaa 21057824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 4206315 - 4206367
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| |||||| ||||||||||| |||||| |||| ||||||||||    
T  4206315 actgacacgtcaacaccgttaataatttgagaaaataaaatatttgaatgtaa 4206367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 627
Target Start/End: Complemental strand, 1375962 - 1375921
Alignment:
Q  586 taataatttgataaaatagaataattgaatgtaaatacatgt 627  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  1375962 taataatttgaaaaaatagcataattgaatgtaaaaacatgt 1375921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 619
Target Start/End: Complemental strand, 35972081 - 35972048
Alignment:
Q  586 taataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||| ||||||||||||||||||||||||    
T  35972081 taataatttaataaaatagaataattgaatgtaa 35972048  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 619
Target Start/End: Complemental strand, 43093595 - 43093543
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| ||||| |||||||||||| ||||| | ||||||||||||||    
T  43093595 actgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaa 43093543  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 619
Target Start/End: Complemental strand, 151472 - 151418
Alignment:
Q  565 atactgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||| ||||| | |||||||||||||||||| |||||| ||||||| |||||||    
T  151472 atacttacacgacaacaccgataataatttgagaaaataaaataattaaatgtaa 151418  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 626
Target Start/End: Complemental strand, 10170451 - 10170397
Alignment:
Q  572 cacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacatg 626  Q
    |||||| ||||| |||||||||||| |||||| | ||||||||||||| ||||||    
T  10170451 cacgtcaacaccaataataatttgagaaaataaattaattgaatgtaactacatg 10170397  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 619
Target Start/End: Original strand, 14227211 - 14227263
Alignment:
Q  567 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 619  Q
    ||||||||||| ||||| |||||||||||| ||||||  |||||| |||||||    
T  14227211 actgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 619
Target Start/End: Complemental strand, 32694808 - 32694776
Alignment:
Q  587 aataatttgataaaatagaataattgaatgtaa 619  Q
    |||||||||| ||||||||||||||||||||||    
T  32694808 aataatttgagaaaatagaataattgaatgtaa 32694776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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