View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103-INSERTION-12 (Length: 784)

Name: NF3103-INSERTION-12
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103-INSERTION-12
NF3103-INSERTION-12
[»] chr8 (2 HSPs)
chr8 (310-784)||(42944135-42944607)
chr8 (6-240)||(42943833-42944065)
[»] chr4 (1 HSPs)
chr4 (389-462)||(33813471-33813544)
[»] chr3 (3 HSPs)
chr3 (382-462)||(25986604-25986684)
chr3 (375-461)||(54158617-54158702)
chr3 (375-457)||(48192825-48192906)
[»] chr5 (2 HSPs)
chr5 (382-461)||(11735815-11735895)
chr5 (391-458)||(11736271-11736338)
[»] chr1 (2 HSPs)
chr1 (409-461)||(36155546-36155598)
chr1 (18-52)||(8242254-8242288)
[»] chr2 (1 HSPs)
chr2 (413-459)||(19182776-19182822)


Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 310 - 784
Target Start/End: Original strand, 42944135 - 42944607
Alignment:
Q  310 tattctcgccatttcatttgtaaaatagacagaagcttcagaaagaacctgcaagttcctaaaaagtgttgaaaaaatagttatgttcgccaaatgaatt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42944135 tattctcgccatttcatttgtaaaatagacagaagcttcagaaagaacctgcaagttcctaaaaagtgttgaaaaaatagttatgttcgccaaatgaatt 42944234  T
Q  410 gaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatcaannnnnnnggtgatagaggcagaagnnnnnnnnn--tcgaagaatcgt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||           ||||||||||||    
T  42944235 gaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatcaatttttttggtgatagaggcagaagaagaaaaaaaatcgaagaatcgt 42944334  T
Q  508 gaataaaattttgcagctcgatacaattgaatgttgacaacaaatcatcaataaccattgaaaagaactaaagaactcagtatcacatgatatgagcaaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42944335 gaataaaattttgcagctcgatacaattgaatgttgacaacaaatcatcaataaccattgaaaagaactaaagaactcagtatcacatgataggagcaaa 42944434  T
Q  608 tatattggaacaaattaagttttatttttcggttagggaagaattgagttgtgtcactgcaggacagaagtacaagcagctgagatactaataaagctac 707  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42944435 tatattggaacaaa----gttttatttttcggttagggaagaattgagttgtgtcactgcaggacagaagtacaagcagctgacatactaataaagctac 42944530  T
Q  708 tactcaagactaagaattagagagatgagatgtggctgtaaatcaatgaattaagcgagcatcttgtgatgtaaatc 784  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42944531 tactcaagactaagatttagagagatgagatgtggctataaatcaatgaattaagcgagcatcttgtgatgtaaatc 42944607  T

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Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 42943833 - 42944065
Alignment:
Q  6 caagtggcaagtgaatggattgtatttttgcatgtgcatgcatttaacaagggagcaacttttctgtaagaattgcttttctgatctctctcatttcatg 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  42943833 caagtggcaagtgaatggattgtatttttgcatgtgcatacatttaacaaggcagcaacttttctgtaagaattgcttttctgatctc--tcatttcatg 42943930  T
Q  106 ctgcaaaaagagagcctatcagattcaacttgcaaatttcctgtaagaatctttgaatattggaatggcgagcacaaaaaattggtacacaaaagaattc 205  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42943931 ctgcaaaaagagagcctatcaggttcaacttgcaaatttcctgtaagaatctttgaatattggaatggcgagcacaaaaaattggtacacaaaagaattc 42944030  T
Q  206 agtggtatggtcgccattttaaacttggaacatat 240  Q
    | ||| |||||||||||||||||||||||||||||    
T  42944031 aatggcatggtcgccattttaaacttggaacatat 42944065  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 33813471 - 33813544
Alignment:
Q  389 gttatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatcaa 462  Q
    |||||||||||||| | || |||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  33813471 gttatgttcgccaactaaaatgaagaacaggggcatttctatcaataattttaaactaggggcagacatatcaa 33813544  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 25986684 - 25986604
Alignment:
Q  382 aaaaatagttatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatcaa 462  Q
    |||||| || ||||||||||| | ||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25986684 aaaaatggtcatgttcgccaactaaaaagaagaacaggggcaattgtatcaataattttcaactaggggcagacatatcaa 25986604  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 461
Target Start/End: Original strand, 54158617 - 54158702
Alignment:
Q  375 gtgttgaaaaaatagttatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatca 461  Q
    ||||||||||||| | ||| ||||||||   |||||||||||| |||||||| || ||||| |||| || |||||||||||||||||    
T  54158617 gtgttgaaaaaat-gctatattcgccaacctaattgaagaacaagggcatttttaacaataattttgaaataggggcagacatatca 54158702  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 48192906 - 48192825
Alignment:
Q  375 gtgttgaaaaaatagttatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacat 457  Q
    ||||||||||||| |  |||||||||||   ||||||| ||||||| ||||| |||||||| |||| |||||| |||||||||    
T  48192906 gtgttgaaaaaat-gccatgttcgccaacctaattgaacaacagggacatttttatcaataattttgaactagtggcagacat 48192825  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 11735895 - 11735815
Alignment:
Q  382 aaaaatagt-tatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatca 461  Q
    ||||||||| |||||||||||||| || ||||||||| ||| | ||| ||||||| |||| ||||||||| ||||||||||    
T  11735895 aaaaatagtgtatgttcgccaaataaaatgaagaacaagggaaattgcatcaataattttgaactaggggtagacatatca 11735815  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 458
Target Start/End: Original strand, 11736271 - 11736338
Alignment:
Q  391 tatgttcgccaaatgaattgaagaacaggggcatttgtatcaatagttttcaactaggggcagacata 458  Q
    |||||||| || ||||| ||||||| | ||||| ||||||||||| |||| |||||||||||||||||    
T  11736271 tatgttcgtcagatgaaatgaagaaaaagggcaattgtatcaataattttgaactaggggcagacata 11736338  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 36155598 - 36155546
Alignment:
Q  409 tgaagaacaggggcatttgtatcaatagttttcaactaggggcagacatatca 461  Q
    ||||||||| |||||| |||| || ||||| ||||||||||||||||||||||    
T  36155598 tgaagaacaagggcatatgtaacattagttctcaactaggggcagacatatca 36155546  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 8242288 - 8242254
Alignment:
Q  18 gaatggattgtatttttgcatgtgcatgcatttaa 52  Q
    |||||||||||||| ||||||||||||||||||||    
T  8242288 gaatggattgtattattgcatgtgcatgcatttaa 8242254  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 19182822 - 19182776
Alignment:
Q  413 gaacaggggcatttgtatcaatagttttcaactaggggcagacatat 459  Q
    ||||| |||||| |||||||||| |||| ||||||||||||||||||    
T  19182822 gaacaagggcatatgtatcaatacttttgaactaggggcagacatat 19182776  T

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