View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103-INSERTION-5 (Length: 103)

Name: NF3103-INSERTION-5
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103-INSERTION-5
NF3103-INSERTION-5
[»] chr8 (1 HSPs)
chr8 (21-99)||(34329826-34329904)
[»] chr5 (3 HSPs)
chr5 (40-94)||(36621854-36621908)
chr5 (45-94)||(36632659-36632708)
chr5 (45-97)||(36627087-36627139)
[»] chr7 (1 HSPs)
chr7 (27-97)||(45306467-45306537)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 34329904 - 34329826
Alignment:
Q  21 ttctctttccatccaaattttttcggataaacgtcgcaacactcagataacccttcttttattttgcataccaaatcct 99  Q
    |||| ||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  34329904 ttctttttccctccaaatatttttggataaacgtcacaacattcagataacccttcttttattttgcataccaaatcct 34329826  T

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Target: chr5 (Bit Score: 43; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 36621854 - 36621908
Alignment:
Q  40 ttttcggataaacgtcgcaacactcagataacccttcttttattttgcataccaa 94  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  36621854 ttttaggataaacgtcacaacattcagataacccttcttttattttgcataccaa 36621908  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 36632659 - 36632708
Alignment:
Q  45 ggataaacgtcgcaacactcagataacccttcttttattttgcataccaa 94  Q
    ||||||||||  |||||||||||||||||||||||||||||||| |||||    
T  36632659 ggataaacgttacaacactcagataacccttcttttattttgcagaccaa 36632708  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 36627087 - 36627139
Alignment:
Q  45 ggataaacgtcgcaacactcagataacccttcttttattttgcataccaaatc 97  Q
    ||||||||||  ||||| |||||||||||||||||||| | ||| ||||||||    
T  36627087 ggataaacgttacaacattcagataacccttcttttatctggcagaccaaatc 36627139  T

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Target: chr7 (Bit Score: 31; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 45306467 - 45306537
Alignment:
Q  27 ttccatccaaattttttcggataaacgtcgcaacactcagataacccttcttttattttgcataccaaatc 97  Q
    |||| ||||||| |||| ||||| | ||| ||| | ||||||||||| | |||||||||||||||||||||    
T  45306467 ttccctccaaatatttttggatagaagtcacaaaattcagataacccctgttttattttgcataccaaatc 45306537  T

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