View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103-INSERTION-7 (Length: 455)
Name: NF3103-INSERTION-7
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103-INSERTION-7 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 413
Target Start/End: Complemental strand, 14193282 - 14192871
Alignment:
| Q |
8 |
atatttgcatttaatgttaattttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttccttgacattcaacaccgggattcctagc |
107 |
Q |
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| T |
14193282 |
atatttgcatctaatgttaattttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttccttgaaattcaacaccgggattcgtagc |
14193183 |
T |
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| Q |
108 |
ttccctgt---atcgtcaaaacttatattaaagtcgaatgtatccgtcaaatcaattacctccggannnnnnngcacctggc---gtactggaatgatga |
201 |
Q |
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| T |
14193182 |
tcccccgttatatagtccaaacgtatattaaagtcgaatgtatccgtcaaatcaagtacctggggatttcgttccaccaggcagggtactggaatgatga |
14193083 |
T |
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| Q |
202 |
ttatcccagcagctagaagcttagtagcgcatcgaactagctcttgccttgctggctttgcatctctaatccggctgtctgtcacagtagaaaagtgcat |
301 |
Q |
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| T |
14193082 |
ttatcccagcagctagaagactagtagcgcatcgaactagctcttgccttgctggctttgcatctctaatccggctgtcttccacagtagaaaagtgcat |
14192983 |
T |
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| Q |
302 |
aaaatcaagtatatgagcacagcccctggtattttgtaaagggtaaccgaatgccctctgcacaattctagcaacccgatgatcgttccagacctccaca |
401 |
Q |
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| T |
14192982 |
taaatcaagtatatgagcacagcccctggtattctgaagagggtaaccgaatgccctctgcacaattctagcaacccgatgatcgttccaaacctgcaca |
14192883 |
T |
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| Q |
402 |
tattgagcaacc |
413 |
Q |
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| T |
14192882 |
tgttgagcaacc |
14192871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 18521949 - 18521891
Alignment:
| Q |
34 |
tctgctcccaagcaatcaaattcctccacctcacttccgttgtttccttgacattcaac |
92 |
Q |
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| T |
18521949 |
tctgttcccaagcaatcaaattcctccacttcacttccgttgtttccttaacatacaac |
18521891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 4555176 - 4555103
Alignment:
| Q |
9 |
tatttgcatttaatgttaattttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttcctt |
82 |
Q |
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| T |
4555176 |
tatttgcatttactccaaattttgctttgctcccaagcaatcaaattcctccacttcacttccgttctttcctt |
4555103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 4591458 - 4591407
Alignment:
| Q |
28 |
ttttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttc |
79 |
Q |
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| T |
4591458 |
ttttgctttgctcccaagcaatcaaattcctccacttcacttccgttgtttc |
4591407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 4620992 - 4620934
Alignment:
| Q |
26 |
aattttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttccttga |
84 |
Q |
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||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
4620992 |
aattttgctttgctcccaagcaatcaaattcctccacttaacttcagttgtttccttga |
4620934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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