View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103-INSERTION-9 (Length: 279)
Name: NF3103-INSERTION-9
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103-INSERTION-9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 50108789 - 50108518
Alignment:
| Q |
8 |
attatgagagtggctaaacacaataatacactaacttatnnnnnnnnnnctaaataaattaagataaaatagaatcgccaaggccaccctaagttaacat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108789 |
attatgagagtggctaaacacaataatacactaacttatcaaaaaaaa-ctaaataaattaagataaaatagaatcgccaaggccaccctaagttaacat |
50108691 |
T |
|
| Q |
108 |
taccctccacccctgatctcatgtacttcatattgcaaggactgatatggtgaaagac-ttgggacttgtacaattgtgttaaatgattcacccccaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50108690 |
taccctccacccctgatctcatgtacttcatattgcaaggactgatatggtgaaagactttgggacttgtgcaattgtgttaaatgattcacccccaaac |
50108591 |
T |
|
| Q |
207 |
aattttggaagctctttctttgataataaacatttaactcttttcaaccaatgttctattcatcctctcggta |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50108590 |
aattttggaagctctttctttgataataaacatttaactcttttcaaccaatgttctattcatcctctcggta |
50108518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 4430067 - 4430105
Alignment:
| Q |
8 |
attatgagagtggctaaacacaataatacactaacttat |
46 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4430067 |
attattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University