View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_high_10 (Length: 573)

Name: NF3103_high_10
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_high_10
NF3103_high_10
[»] chr4 (1 HSPs)
chr4 (18-566)||(5810610-5811158)
[»] chr3 (3 HSPs)
chr3 (341-502)||(27736007-27736168)
chr3 (20-209)||(27736240-27736429)
chr3 (513-566)||(27735910-27735963)
[»] chr8 (7 HSPs)
chr8 (20-218)||(32627333-32627531)
chr8 (63-209)||(32708923-32709069)
chr8 (364-566)||(32626905-32627116)
chr8 (135-221)||(32703480-32703566)
chr8 (511-563)||(32702691-32702743)
chr8 (380-493)||(32708666-32708779)
chr8 (396-448)||(7297160-7297212)
[»] chr6 (5 HSPs)
chr6 (347-448)||(20117882-20117983)
chr6 (347-448)||(21941867-21941968)
chr6 (164-214)||(21943082-21943132)
chr6 (63-200)||(20116664-20116801)
chr6 (20-120)||(21943164-21943264)


Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 5811158 - 5810610
Alignment:
Q  18 cacaaggcttactacgagcaatttcaaacagatttctcnnnnnnnctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttt 117  Q
    ||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811158 cacaaggcttactacaagcaatttcaaacagatttctctttttttctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttt 5811059  T
Q  118 taggacgaaaaaacagtgatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggttttgcaggtagactatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5811058 taggacgaaaaaacagtgatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggttttgcaggtagactatga 5810959  T
Q  218 taattttttcttgttcatattaatttagaaaatggtcatagaacacaataaatacgtgggtgaatatgagaaaaaattccaaaattttgaag-nnnnnnn 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            
T  5810958 taattttttcttgttcatattaatttagaaaatggtcatagaacacaataaatacgtgggtgaatatgaga-aaaattccaaaattttgaagaaaaaaaa 5810860  T
Q  317 nttaactattaatatgcatattattatgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgag 416  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5810859 attaactattaatatgcatattattatgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgag 5810760  T
Q  417 gttgagttggaagttctcactgaaggatcattctccatcagtcgattagaggtttctgaagtaaattggaatgctctcgataattgggatcaatttgatg 516  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| |||    
T  5810759 gttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagtaaattggaatgctcttgacaattgggatcattttaatg 5810660  T
Q  517 atggatacaatgtggcacaatgcataagggctgtggctgaacctttgcta 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5810659 atggatacaatgtggcacaatgcataagggctgtggctgaacctttgcta 5810610  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 341 - 502
Target Start/End: Complemental strand, 27736168 - 27736007
Alignment:
Q  341 tatgccgcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaa 440  Q
    ||||| ||||||||||||| || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||| ||||    
T  27736168 tatgctgcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaa 27736069  T
Q  441 ggatcattctccatcagtcgattagaggtttctgaagtaaattggaatgctctcgataattg 502  Q
    ||||||||   ||||| |  ||| |||||||||||||| |||||||||||||| ||| ||||    
T  27736068 ggatcatttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgattg 27736007  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 27736429 - 27736240
Alignment:
Q  20 caaggcttactacgagcaatttcaaacagatttctcnnnnnnnctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacattttta 119  Q
    ||||||||||||| ||||||||| ||||||||||||       ||    ||||||||| ||||| |||||||||| | ||| |||||||||||| |||||    
T  27736429 caaggcttactacaagcaatttcgaacagatttctctttttttcttcgatgtcgtgccaaagaattagttgaaggagctcaaatgattctaacactttta 27736330  T
Q  120 ggacgaaaaaacagtgatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggttttgcaggta 209  Q
    ||| | |||  |    |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  27736329 ggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgggaactcatggctatggcccttaatgatatggtcttgcaggta 27736240  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 27735963 - 27735910
Alignment:
Q  513 gatgatggatacaatgtggcacaatgcataagggctgtggctgaacctttgcta 566  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27735963 gatgatggatacaatatggcacaatgcattagggctgtggctgaacctttgcta 27735910  T

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Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 32627531 - 32627333
Alignment:
Q  20 caaggcttactacgagcaatttcaaacagatttctcnnnnnnnctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacattttta 119  Q
    ||||||||||||| ||||||| |||| |||||||||       ||||||||||||||||||||| |||||||||| |||  ||||||| |||||||| ||    
T  32627531 caaggcttactacaagcaattccaaatagatttctctctttttctcaagtgtcgtgccgaagaaatagttgaagggggttgcatgattataacatttgta 32627432  T
Q  120 ggacgaaaaaacagtgatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggttttgcaggtagactatgat 218  Q
    ||| |||||| |    ||||| |||||||||||| | ||||||||||||||||  ||||||||||||||||||| ||||| ||| ||||| | ||||||    
T  32627431 ggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggctcttaatgacatggtcttggaggtaaagtatgat 32627333  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 32709069 - 32708923
Alignment:
Q  63 ctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttttaggacgaaaaa---acagtgatccatcaagcaaggagtctggtt 159  Q
    ||||||||||||||  | ||| ||||||||||||||| |||||||||||||||||||||| ||||||   |||  ||   ||  |||||||||| | | |    
T  32709069 ctcaagtgtcgtgcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgaca-agaagtat--agcaaggagtgttgct 32708973  T
Q  160 acatttgggaactcatggctatggctcttaatgatatggttttgcaggta 209  Q
    ||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  32708972 acatttgggaacttatggctatagctcttaatgatatggtcttgcaggta 32708923  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 566
Target Start/End: Complemental strand, 32627116 - 32626905
Alignment:
Q  364 aagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatcattctccatcagtcgatt 463  Q
    ||||||||||||||| ||||||||| ||||  |||||||||||||||||||| ||  | ||||||||| | ||||||||||||||   ||| | || | |    
T  32627116 aagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatttgtcatgaatcaact 32627017  T
Q  464 agaggtttctgaagtaaattggaatgctctcgataattggga---tcaat--tt----gatgatggatacaatgtggcacaatgcataagggctgtggct 554  Q
     ||| | |||||||| |||||||||||||  ||| |||  ||   | |||  ||    ||||||||||||||||||||||||||||| || ||| |||||    
T  32627016 cgagatatctgaagtgaattggaatgctcgtgatgattttgaatctgaatcattcggagatgatggatacaatgtggcacaatgcatgagagctttggct 32626917  T
Q  555 gaacctttgcta 566  Q
    ||||||||||||    
T  32626916 gaacctttgcta 32626905  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 32703566 - 32703480
Alignment:
Q  135 gatccatcaagcaaggagtctggttacatttgggaactcatggctatggctcttaatgatatggttttgcaggtagactatgataat 221  Q
    |||||||||||||| |||| | ||||| |||||||| | |||||||||| ||||||||| ||||| ||||||||| |||||||||||    
T  32703566 gatccatcaagcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaactatgataat 32703480  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 511 - 563
Target Start/End: Complemental strand, 32702743 - 32702691
Alignment:
Q  511 ttgatgatggatacaatgtggcacaatgcataagggctgtggctgaacctttg 563  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  32702743 ttgataatggatacgatgtggcacaatgcataagggctgtggctgaacctttg 32702691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 493
Target Start/End: Complemental strand, 32708779 - 32708666
Alignment:
Q  380 tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatcattctccatcagtcgattagaggtttctgaagta 479  Q
    ||||||||||||| | ||   |||||||||||| || ||  | |||||||||||||  |||||||||||  |||||  |||||| |  |||||||||||     
T  32708779 tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg 32708680  T
Q  480 aattggaatgctct 493  Q
    ||||||||||||||    
T  32708679 aattggaatgctct 32708666  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 7297212 - 7297160
Alignment:
Q  396 tattatccatctccatctgaggttgagttggaagttctcactgaaggatcatt 448  Q
    ||||||||||| |||| ||| |||||||| |||||||||| ||||||||||||    
T  7297212 tattatccatcaccatatgaagttgagttagaagttctcaatgaaggatcatt 7297160  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 448
Target Start/End: Original strand, 20117882 - 20117983
Alignment:
Q  347 gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatca 446  Q
    |||||||||||| ||  ||||||  ||||||| ||||||  ||||||||||||||||||||||| |||| ||  | ||||||||||| |||||||| |||    
T  20117882 gcagggaatcatagaagaagagaccctcaatactttcaatctccctaactattatccatctccaactgaagtgaaattggaagttctaactgaagggtca 20117981  T
Q  447 tt 448  Q
    ||    
T  20117982 tt 20117983  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 448
Target Start/End: Complemental strand, 21941968 - 21941867
Alignment:
Q  347 gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcactgaaggatca 446  Q
    |||||||||||| ||  ||||||||||||||| ||||||||| |||| ||||| |||||||||||||||  |  |  |||||||||| ||||||| ||||    
T  21941968 gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca 21941869  T
Q  447 tt 448  Q
    ||    
T  21941868 tt 21941867  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 21943132 - 21943082
Alignment:
Q  164 ttgggaactcatggctatggctcttaatgatatggttttgcaggtagacta 214  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  21943132 ttgggaacttttggctatggctcttaatgatatggttatgcaggtagacta 21943082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 20116664 - 20116801
Alignment:
Q  63 ctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacatttttaggacgaaaaaacagtgatccatcaagcaaggagtctggttaca 162  Q
    ||||||||||||||| ||||| | |||||||| |||  ||||||||| |||||| ||||| || |||    |||||||| |||||| | |  | |||||     
T  20116664 ctcaagtgtcgtgccaaagaattggttgaaggaggttgcatgattctgacatttataggaagagaaagtgatgatccattaagcaatggggtttgttacc 20116763  T
Q  163 tttgggaactcatggctatggctcttaatgatatggtt 200  Q
    ||||||||||  ||||||  ||||||||||||||||||    
T  20116764 tttgggaacttttggctacagctcttaatgatatggtt 20116801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 21943264 - 21943164
Alignment:
Q  20 caaggcttactacgagcaatttcaaacagatttctcnnnnnnnctcaagtgtcgtgccgaagaactagttgaaggtggtcacatgattctaacattttta 119  Q
    |||||||||||| ||||||||||| | |||||| ||       || |||||||||||| |||||||||||||||| |||  |||| || |||||||||||    
T  21943264 caaggcttactatgagcaatttcatagagatttatctctttttctaaagtgtcgtgcccaagaactagttgaagggggttgcatggttataacattttta 21943165  T
Q  120 g 120  Q
    |    
T  21943164 g 21943164  T

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