View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_15 (Length: 491)
Name: NF3103_high_15
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 14192634 - 14192172
Alignment:
| Q |
10 |
agcagcacagatcttttccctggtttcaaatattgggtcttcggcatctattgctggctgattaagtttactgagaaactgtaacagaaaacaaccatcc |
109 |
Q |
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| T |
14192634 |
agcagcacacatcttttccctggtttcaaatattgggtcttggggatctattgttgggtgttcaagtctactgagaagctgtaacagaaaacaaccatcc |
14192535 |
T |
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| Q |
110 |
aatatcattgttctcccgataacatctgcagttaattctgaacctaagatgctagcatcatagcttgcgcgggtgtctatttcaaatatgggaatatcta |
209 |
Q |
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| T |
14192534 |
aatatcatttttctcccgataacatctgtagttaattctgaacctaagatgctaccatcatagcttgcgcggatgtctatttcaaatatgggaatatctt |
14192435 |
T |
|
| Q |
210 |
cgttacatgcccttaacattgtcatgaatagttctggttcatgctgctggttctcttgacgcagaaacctgtccatgtattgccatttattgcctaccat |
309 |
Q |
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| T |
14192434 |
cgctacatgcacttaaccttgtgtcgaatgttcctggtacattctgctggttttcttgaagcagaaacctgttcatgtattgccatttaatgcctaccat |
14192335 |
T |
|
| Q |
310 |
caattggacttggtggtagctcgtttctcccctgggtaagaaccctataaagatagactttggcgtgtaagcgtccttttttaggtctcgaagnnnnnnn |
409 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14192334 |
caattggacttggcggtagttcgtttctcccctgggtaagagtcctataaagatagactttggcgtgtaagcgtcctcttttaggtctcgaagtttgttt |
14192235 |
T |
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| Q |
410 |
ggaaccctgcaaatgctgcatggatgaacttcttcgtaaagtctagactccaacgctgcttgc |
472 |
Q |
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| T |
14192234 |
ggaaccctgcaaatgctgcatggatgaacttcttcgtaaagtctagactccaacactgcttgc |
14192172 |
T |
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