View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_16 (Length: 457)
Name: NF3103_high_16
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 19956556 - 19956987
Alignment:
| Q |
13 |
caaaggcataaagat---tactcacgtaaataagactcaagctctattgtgtccatttccttattcatcaactctcgaatattgagaggtaacaccctct |
109 |
Q |
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| T |
19956556 |
caaaggcataaagataaatactcacgtaaataagactcaagctctactgtgtccatttccttattcattaactctcgaatattgagaggtaccaccctct |
19956655 |
T |
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| Q |
110 |
taagaaaaaagaccacgtccttctcgtagtcgtctagcttctcgaaatcatagctagtcacaaaagtcaggttacttgtccaaca--aaggaaattatcg |
207 |
Q |
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| T |
19956656 |
taagaaaaaagaccacgtccttctcgtagtcgtttaacttctcgaaatcatagccagtccaagaagtcgggttgcttgtccaacataaaggaaattatcg |
19956755 |
T |
|
| Q |
208 |
ttctccgttgatagtcacagtcgcctctggacaatccttagctccacgaacccgaaactcgaaagtatctctccttatagtttttataatgggaggtgta |
307 |
Q |
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||| || ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| |||||| ||||||||| |
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| T |
19956756 |
ttcaccattgatagtcacagccacctctggacaatccttagctccacgaacacgaaactcgaaagtatctctgcttctagtttatataataggaggtgta |
19956855 |
T |
|
| Q |
308 |
ggttgggaacaaactcttgtttgggtgcacgctgatagatacccaagactatcggtaaactcctttagtcccataaaagaataagaacacgcccattgaa |
407 |
Q |
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||||| |||||||||||||| ||||||| ||||||| |||||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19956856 |
agttggaaacaaactcttgttggggtgcaagctgataaatacccaacattgtcggtaaactcctttagtcccataaaagaataagaacatgcccattgaa |
19956955 |
T |
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| Q |
408 |
agttggaaccctaaactttcatataggatctc |
439 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19956956 |
agttggaaccctaaactttcatataggatctc |
19956987 |
T |
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