View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_high_2 (Length: 760)

Name: NF3103_high_2
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_high_2
NF3103_high_2
[»] chr7 (24 HSPs)
chr7 (354-577)||(42513062-42513285)
chr7 (354-504)||(30456307-30456456)
chr7 (430-577)||(38572287-38572434)
chr7 (354-504)||(30452702-30452847)
chr7 (364-476)||(11206499-11206611)
chr7 (353-533)||(41712265-41712443)
chr7 (365-529)||(49017102-49017266)
chr7 (13-84)||(12632162-12632233)
chr7 (1-84)||(37639389-37639472)
chr7 (364-478)||(6102928-6103043)
chr7 (1-68)||(10372025-10372092)
chr7 (1-68)||(38230043-38230110)
chr7 (1-83)||(47301624-47301706)
chr7 (13-61)||(3342772-3342820)
chr7 (13-61)||(48134562-48134610)
chr7 (13-84)||(9456064-9456135)
chr7 (14-61)||(39391217-39391264)
chr7 (13-83)||(44967478-44967548)
chr7 (14-84)||(47021878-47021948)
chr7 (21-61)||(1766407-1766447)
chr7 (20-54)||(19095926-19095960)
chr7 (20-58)||(43738025-43738063)
chr7 (13-82)||(37562531-37562600)
chr7 (583-616)||(38572462-38572495)
[»] chr3 (27 HSPs)
chr3 (354-554)||(36326442-36326640)
chr3 (415-577)||(30911982-30912144)
chr3 (403-575)||(55211737-55211905)
chr3 (364-450)||(14029381-14029467)
chr3 (423-577)||(32414663-32414821)
chr3 (13-93)||(35425263-35425343)
chr3 (13-84)||(20813084-20813155)
chr3 (1-84)||(23496262-23496345)
chr3 (20-108)||(53179763-53179851)
chr3 (13-68)||(8424821-8424876)
chr3 (13-84)||(14959657-14959728)
chr3 (14-61)||(30811624-30811671)
chr3 (13-61)||(16246186-16246234)
chr3 (13-60)||(10853359-10853406)
chr3 (13-84)||(35930676-35930747)
chr3 (401-490)||(33328218-33328306)
chr3 (13-61)||(15511467-15511515)
chr3 (13-61)||(38172399-38172447)
chr3 (13-93)||(44939506-44939586)
chr3 (354-393)||(30912146-30912185)
chr3 (13-84)||(44224700-44224771)
chr3 (13-68)||(48189533-48189588)
chr3 (14-84)||(31084146-31084216)
chr3 (368-410)||(32414847-32414889)
chr3 (17-71)||(50392298-50392352)
chr3 (32-61)||(22736942-22736971)
chr3 (583-616)||(30911921-30911954)
[»] chr6 (14 HSPs)
chr6 (352-577)||(4834644-4834871)
chr6 (354-577)||(7415566-7415789)
chr6 (354-561)||(7422590-7422797)
chr6 (354-574)||(7426516-7426736)
chr6 (354-577)||(33242776-33242998)
chr6 (354-456)||(13886589-13886691)
chr6 (1-84)||(16548077-16548160)
chr6 (4-66)||(17830081-17830143)
chr6 (13-82)||(16442442-16442511)
chr6 (507-577)||(13886515-13886585)
chr6 (1-54)||(31132432-31132485)
chr6 (20-84)||(21455820-21455884)
chr6 (36-84)||(33899120-33899168)
chr6 (23-57)||(26274728-26274762)
[»] chr5 (26 HSPs)
chr5 (353-577)||(8123455-8123679)
chr5 (619-745)||(4287441-4287567)
chr5 (364-577)||(671389-671602)
chr5 (1-149)||(4292038-4292184)
chr5 (353-481)||(41709523-41709651)
chr5 (240-327)||(4287571-4287658)
chr5 (354-504)||(24108697-24108848)
chr5 (14-110)||(16158555-16158651)
chr5 (1-84)||(22482141-22482224)
chr5 (354-434)||(10321869-10321949)
chr5 (13-68)||(32030684-32030739)
chr5 (13-61)||(40885185-40885233)
chr5 (13-68)||(2430385-2430440)
chr5 (13-84)||(9275573-9275644)
chr5 (13-88)||(33953990-33954065)
chr5 (13-54)||(13253171-13253212)
chr5 (20-105)||(40495453-40495538)
chr5 (21-61)||(2694857-2694897)
chr5 (20-56)||(2861617-2861653)
chr5 (20-60)||(3060318-3060358)
chr5 (13-57)||(3667833-3667877)
chr5 (13-57)||(35760168-35760212)
chr5 (12-83)||(24045784-24045855)
chr5 (14-84)||(10058026-10058096)
chr5 (14-84)||(41834844-41834914)
chr5 (13-82)||(7714894-7714963)
[»] chr1 (26 HSPs)
chr1 (354-577)||(18583886-18584109)
chr1 (354-504)||(23405475-23405625)
chr1 (20-108)||(12468151-12468239)
chr1 (1-80)||(1199793-1199872)
chr1 (1-84)||(35569283-35569366)
chr1 (354-444)||(21075941-21076031)
chr1 (1-93)||(40821778-40821870)
chr1 (1-84)||(20800358-20800441)
chr1 (13-82)||(40229563-40229632)
chr1 (13-93)||(6464561-6464641)
chr1 (13-93)||(45710002-45710082)
chr1 (16-68)||(50977435-50977487)
chr1 (514-577)||(13087634-13087696)
chr1 (1-83)||(25229970-25230052)
chr1 (13-54)||(35536064-35536105)
chr1 (364-444)||(9893803-9893883)
chr1 (13-61)||(13055983-13056031)
chr1 (13-61)||(13931608-13931656)
chr1 (13-61)||(31223359-31223407)
chr1 (13-84)||(4369895-4369966)
chr1 (20-83)||(11051410-11051473)
chr1 (364-481)||(13087701-13087817)
chr1 (14-84)||(5410602-5410672)
chr1 (14-84)||(7826448-7826518)
chr1 (13-55)||(43728970-43729012)
chr1 (13-54)||(12247412-12247453)
[»] chr8 (19 HSPs)
chr8 (354-495)||(44761976-44762117)
chr8 (354-495)||(44765283-44765424)
chr8 (1-84)||(43550837-43550920)
chr8 (13-84)||(6399200-6399271)
chr8 (13-54)||(36114132-36114173)
chr8 (13-54)||(45147342-45147383)
chr8 (13-57)||(4941873-4941917)
chr8 (36-84)||(26125518-26125566)
chr8 (1-56)||(41289138-41289193)
chr8 (20-84)||(28425571-28425635)
chr8 (13-57)||(29023212-29023256)
chr8 (13-61)||(40742093-40742141)
chr8 (13-57)||(42148978-42149022)
chr8 (13-60)||(3097298-3097345)
chr8 (13-84)||(41981103-41981174)
chr8 (13-55)||(25698051-25698093)
chr8 (20-54)||(34342951-34342985)
chr8 (20-61)||(26243060-26243101)
chr8 (13-54)||(27649722-27649763)
[»] chr4 (23 HSPs)
chr4 (354-504)||(27387620-27387770)
chr4 (354-486)||(55322334-55322467)
chr4 (464-577)||(20441029-20441141)
chr4 (1-84)||(16566228-16566311)
chr4 (354-495)||(36050673-36050813)
chr4 (354-495)||(36053932-36054072)
chr4 (13-88)||(14072422-14072497)
chr4 (364-478)||(24733642-24733756)
chr4 (13-93)||(54152959-54153039)
chr4 (13-84)||(55638879-55638950)
chr4 (13-83)||(39636709-39636779)
chr4 (13-57)||(49136472-49136516)
chr4 (1-84)||(15619540-15619622)
chr4 (581-616)||(36050519-36050554)
chr4 (581-616)||(36053778-36053813)
chr4 (13-57)||(29149399-29149443)
chr4 (1-57)||(38693998-38694054)
chr4 (13-61)||(48550519-48550567)
chr4 (13-57)||(51922890-51922934)
chr4 (13-68)||(32238150-32238205)
chr4 (13-84)||(56241927-56241998)
chr4 (20-82)||(9889433-9889495)
chr4 (13-83)||(43772215-43772285)
[»] chr2 (21 HSPs)
chr2 (462-577)||(31211616-31211731)
chr2 (354-458)||(31211859-31211963)
chr2 (370-504)||(45327420-45327554)
chr2 (13-84)||(5916331-5916402)
chr2 (13-84)||(36312224-36312295)
chr2 (17-61)||(31562778-31562822)
chr2 (13-93)||(14821101-14821181)
chr2 (13-57)||(2213480-2213524)
chr2 (17-61)||(3552940-3552984)
chr2 (13-57)||(7472763-7472807)
chr2 (13-61)||(9988591-9988639)
chr2 (13-57)||(28127377-28127421)
chr2 (13-68)||(8170276-8170331)
chr2 (364-437)||(31193244-31193317)
chr2 (13-83)||(42516065-42516135)
chr2 (1-50)||(1945117-1945166)
chr2 (20-61)||(3853870-3853911)
chr2 (15-56)||(18511077-18511118)
chr2 (20-57)||(23358232-23358269)
chr2 (13-54)||(39141559-39141600)
chr2 (354-391)||(40400909-40400946)
[»] scaffold0369 (1 HSPs)
scaffold0369 (13-108)||(8363-8458)
[»] scaffold0007 (1 HSPs)
scaffold0007 (14-68)||(29215-29269)
[»] scaffold0394 (1 HSPs)
scaffold0394 (1-68)||(5906-5978)
[»] scaffold0381 (1 HSPs)
scaffold0381 (20-82)||(9051-9113)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 1e-89; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 354 - 577
Target Start/End: Original strand, 42513062 - 42513285
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 42513161  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | ||||||||||    
T  42513162 aataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctaga 42513261  T
Q  554 tccttctagactaaggtgagtcat 577  Q
    |||||||||| |||||||||||||    
T  42513262 tccttctagattaaggtgagtcat 42513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 30456456 - 30456307
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 504  Q
     ||||  |||| ||||||||||||||||| |||||||||||||||| ||||    
T  30456356 cataaggcatataatgcttatatagactt-tgcatactcataataagataa 30456307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 430 - 577
Target Start/End: Original strand, 38572287 - 38572434
Alignment:
Q  430 attatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 529  Q
    |||||||| || ||| |||||||||||||  ||||||||| ||||||||||||| ||||| ||||||||| ||||||| |||| ||| |||||||||| |    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  530 tcccctaacaagataccttctagatccttctagactaaggtgagtcat 577  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38572387 tcccctaacaagataccttctagatccttttagattaaggtgagtcat 38572434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 30452847 - 30452702
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30452748  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 504  Q
     ||||  |||||||    ||||||||||| |||||||||||||||| ||||    
T  30452747 cataaggcatacaa----tatatagactt-tgcatactcataataagataa 30452702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 364 - 476
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  364 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacat 463  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||    
T  11206611 caattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcat 11206512  T
Q  464 acaatgcttatat 476  Q
    |||||| ||||||    
T  11206511 acaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 353 - 533
Target Start/End: Complemental strand, 41712443 - 41712265
Alignment:
Q  353 ttgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 451  Q
    |||||||||  ||||||||||| ||||||||||||| || || |||| || |||||||||| || |||||| |||||  |||| ||  ||||||||||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagaga-aaactagagacaaaagaaaggaaatttgttatttt--tcattcattctc 41712347  T
Q  452 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatccc 533  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||    
T  41712346 ataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatccc 41712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 365 - 529
Target Start/End: Complemental strand, 49017266 - 49017102
Alignment:
Q  365 aattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacata 464  Q
    ||||||| |||||||||||||||| || | |||| ||||||||||||| || |||||||||||  |||||||| |||||| | |||||||||||  ||||    
T  49017266 aattcgaatagggatcacactccataaattagagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcata 49017167  T
Q  465 caatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 529  Q
    ||||||||||| | ||||||| ||| ||||||||| ||||||||| |  ||||||||||||||||    
T  49017166 caatgcttatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatatca 49017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 12632162 - 12632233
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  12632162 gttgatgttgtttgaattgtttgaatcaaaattgattttgaatgtgtaatgaccaaaatatccttttaattg 12632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 37639472 - 37639389
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||| ||||||| ||||||| ||| |||||||||||||| ||||| ||||||||| ||||||  |||| |||||||||    
T  37639472 tgattcttgtgggttgatgttgtttggatagtttgaatcaaaattaattttaaatgtgtaatgactaaactatccttttaattg 37639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 364 - 478
Target Start/End: Complemental strand, 6103043 - 6102928
Alignment:
Q  364 caattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagag-aaagaaaattcattatattattcattcattctcataataaaac 461  Q
    ||||||||||||| ||||||||||| || || |||| || |||||||||| || || ||| ||||||||||||||| |||||| ||||| || || |||     
T  6103043 caattcgagtaggaatcacactccataaattaagagaga-aaactagagataaaagcaaaaaaaattcattatatttttcattgattctaatcatgaaag 6102945  T
Q  462 atacaatgcttatatag 478  Q
    |||||||||||||||||    
T  6102944 atacaatgcttatatag 6102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10372025 - 10372092
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||||||| ||||||| ||||| | ||| ||||||||||||||||||||||||| |||| ||||||    
T  10372025 tgattcttgtgggttgatgttgttcggatagtttgaatcaaaattgattttgaatgcgtaatgactaa 10372092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 38230110 - 38230043
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||||    
T  38230110 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttaaatgtgtaatgactaa 38230043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 47301624 - 47301706
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||||| | ||||||| ||||||| ||| ||||||||||||||||||||||||||  || ||||||  |||| ||||||||    
T  47301624 tgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgactaaattatccttttaatt 47301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 3342820 - 3342772
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  3342820 gttgatgttgtttgaatagtttgaatcaaaattgattttgaatatgtaa 3342772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 48134610 - 48134562
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  48134610 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaa 48134562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 9456135 - 9456064
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||  || ||| ||  ||||||||||||||    
T  9456135 gttgatcttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgaccaaattatctttttaattg 9456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 39391217 - 39391264
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  39391217 ttgatgttgtttgaatagtttgaatcaaaattgattttgaacgtgtaa 39391264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 44967478 - 44967548
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||| ||||||| |||||||||||||||||||||||||| | ||||| ||| ||  |||| ||||||||    
T  44967478 gttgatgttgtttggataatttgaatcaaaattgattttgagtttgtaatgaccaaattatccttttaatt 44967548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 47021948 - 47021878
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||| || ||| ||  |||| |||||||||    
T  47021948 ttgatgttgtttggataatttgaatgaaaattgattttgaatgtgcaatgaccaaattatcattttaattg 47021878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 1766447 - 1766407
Alignment:
Q  21 tgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  1766447 tgtttgaataatttgaattaaaattgattttgagtgtgtaa 1766407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 19095960 - 19095926
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaa 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  19095960 ttgtttggataatttgaatcaaaattgattttgaa 19095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 43738025 - 43738063
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtg 58  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  43738025 ttgtttggatagtttgaatcaaaattgattttgaatgtg 43738063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 37562600 - 37562531
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    |||||| ||||||| ||| ||||||| ||||||||||||| |||||||| ||| ||  |||| |||||||    
T  37562600 gttgatgttgtttggatagtttgaatgaaaattgattttgtatgtgtaatgaccaaactatccttttaat 37562531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 616
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
Q  583 cacattagtactcattattctaaatatcctatca 616  Q
    ||||||||||||||||||||||||||| ||||||    
T  38572462 cacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 1e-83; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 354 - 554
Target Start/End: Complemental strand, 36326640 - 36326442
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 36326541  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36326540 aataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagataccttctaga 36326443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 415 - 577
Target Start/End: Complemental strand, 30912144 - 30911982
Alignment:
Q  415 agagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcacccca 514  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |    
T  30912144 agagaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcacccta 30912045  T
Q  515 acatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 577  Q
    ||||||||||||| ||||||||||||||||  || |||||||||||||| |||||||||||||    
T  30912044 acatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtcat 30911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 403 - 575
Target Start/End: Original strand, 55211737 - 55211905
Alignment:
Q  403 aaactagagaaaagagaaaga-aaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataaca 501  Q
    |||||||||| |||||| | | |||||||||||||| |||||| |||||||||||||  |||||||     ||||||||||||||||| ||||||||| |    
T  55211737 aaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataaga 55211831  T
Q  502 taagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 575  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||| | ||||||| |||| |||| ||||||    
T  55211832 taagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtc 55211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 14029467 - 14029381
Alignment:
Q  364 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattct 450  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  14029467 caattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 423 - 577
Target Start/End: Complemental strand, 32414821 - 32414663
Alignment:
Q  423 aaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgt----gcatactcataataacataagtgcaccccaacat 518  Q
    |||| |||||||||| || ||| |||||| ||||||  ||||||||| ||||||||||||||    ||| ||||| ||||| |||||||||||  |||||    
T  32414821 aaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacat 32414722  T
Q  519 actcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 577  Q
    ||| ||||| ||||||  |||| ||||||||||||||||| |||  |||||||||||||    
T  32414721 acttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcat 32414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 35425343 - 35425263
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||| ||| |||| ||||    
T  35425343 gttgatattgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaattatccttttgattaaaactaaat 35425263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 20813155 - 20813084
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  20813155 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 20813084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23496345 - 23496262
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||  ||||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| |||||||||    
T  23496345 tgattcttgcgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatgactaaactatcattttaattg 23496262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 53179851 - 53179763
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 108  Q
    ||||||| ||| ||| ||||||||||||||||||||||  || ||| ||  |||| |||||||| ||||||||||||| ||||||||||    
T  53179851 ttgtttggatagtttaaatcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaaccaaattatcaaatactccaa 53179763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 8424821 - 8424876
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  8424821 gttgatgttgtttgaatagtttgaatcaaaattgattttgagtgtgtaatgactaa 8424876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 14959728 - 14959657
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||  || |||||||||||| ||||||||||||||||||||| |||  ||||||||||||||    
T  14959728 gttgatgttgtttagatgatttgaatcaaacttgattttgaatgtgtaacgattaaattatctttttaattg 14959657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 30811624 - 30811671
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  30811624 ttgatattgtttggatagtttgaatcaaaattgattttgaatgtgtaa 30811671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 16246186 - 16246234
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  16246186 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaa 16246234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 10853359 - 10853406
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgta 60  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  10853359 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgta 10853406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 35930747 - 35930676
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||||| |||||| ||  ||| |||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  35930747 gttgataatgtttggatggtttaaatcaaaattgattttgaatgtgtaatgaccaaaatatcattttaattg 35930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 490
Target Start/End: Complemental strand, 33328306 - 33328218
Alignment:
Q  401 agaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatac 490  Q
    |||||||| |||||| |||||| ||||| |||||||  ||||||  |||| || ||||| ||||||||||||||| |||||| |||||||    
T  33328306 agaaacta-agaaaaaagaaaggaaattgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatac 33328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 15511467 - 15511515
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||| ||||    
T  15511467 gttgatattgtttggatagtttgaataaaaattgattttgaatgcgtaa 15511515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38172399 - 38172447
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||||||||||    
T  38172399 gttgatgttgtttggatagtttgaattaaaattgattttgaatgtgtaa 38172447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 44939506 - 44939586
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||| ||||||||||| ||| |||||||||| ||||||||||| ||| ||||||  |||| || ||||| |||| ||||    
T  44939506 gttgatgttgtttgaatagttttaatcaaaattaattttgaatgtctaatgactaaattatccttataattaaaactaaat 44939586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 393
Target Start/End: Complemental strand, 30912185 - 30912146
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaatt 393  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaatt 30912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 44224771 - 44224700
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||||||| | ||||||||||||||||||||| || ||| ||  |||| |||||||||    
T  44224771 gttgatgttgtttggataattttagtcaaaattgattttgaatgtgcaatgaccaaattatccttttaattg 44224700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 48189533 - 48189588
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||| ||| ||||||| |||||||||||||||||| ||| ||||||    
T  48189533 gttgatgttgtttggatagtttgaattaaaattgattttgaatgtataatgactaa 48189588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 31084216 - 31084146
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||| |||| ||| ||||||||| |||||||||||||| ||||| ||| ||  |||| |||||||||    
T  31084216 ttgatattatttggatagtttgaatcataattgattttgaatatgtaatgaccaaactatcattttaattg 31084146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 32414889 - 32414847
Alignment:
Q  368 tcgagtagggatcacactccagaattcagagggagaaactaga 410  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaactaga 32414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 50392298 - 50392352
Alignment:
Q  17 atattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatat 71  Q
    |||||||||| |||||||  ||||||||||||||||||||| |||  ||||||||    
T  50392298 atattgtttggataattttgatcaaaattgattttgaatgtataattactaatat 50392352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 22736971 - 22736942
Alignment:
Q  32 tttgaatcaaaattgattttgaatgtgtaa 61  Q
    ||||||||||||||||||||||||||||||    
T  22736971 tttgaatcaaaattgattttgaatgtgtaa 22736942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 616
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
Q  583 cacattagtactcattattctaaatatcctatca 616  Q
    ||||||||||||||||||||||| ||||||||||    
T  30911954 cacattagtactcattattctaagtatcctatca 30911921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 3e-78; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 352 - 577
Target Start/End: Complemental strand, 4834871 - 4834644
Alignment:
Q  352 gttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 451  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  4834871 gttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  452 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagata--ccttc 549  Q
    ||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||  ||||     
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt 4834672  T
Q  550 tagatccttctagactaaggtgagtcat 577  Q
    |||||||||||||| |||||||||||||    
T  4834671 tagatccttctagattaaggtgagtcat 4834644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 354 - 577
Target Start/End: Complemental strand, 7415789 - 7415566
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||| ||| | |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7415690  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||  |||||||||||||||||||||| ||  |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||  |||||||    
T  7415689 aataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctaga 7415590  T
Q  554 tccttctagactaaggtgagtcat 577  Q
    |||||||| | |||| ||||||||    
T  7415589 tccttctaaattaagatgagtcat 7415566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 354 - 561
Target Start/End: Complemental strand, 7422797 - 7422590
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7422698  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||  |||||||||||||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||| | |||||||||||||||| ||||||||    
T  7422697 aataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctaga 7422598  T
Q  554 tccttcta 561  Q
    ||||||||    
T  7422597 tccttcta 7422590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 354 - 574
Target Start/End: Complemental strand, 7426736 - 7426516
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctcat 7426637  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||  ||||||||| |||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||| ||||||||    
T  7426636 aataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctaga 7426537  T
Q  554 tccttctagactaaggtgagt 574  Q
    |||| ||||| |||| |||||    
T  7426536 tcctactagattaagatgagt 7426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 354 - 577
Target Start/End: Complemental strand, 33242998 - 33242776
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||| ||||||||||||||| | |||| ||||||||||| | || |||||  |||||||||||||| |||||| ||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctcat 33242899  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 553  Q
    |||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||| ||  |||||| |    
T  33242898 aataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaaa 33242800  T
Q  554 tccttctagactaaggtgagtcat 577  Q
    ||||| ||||||||| ||| ||||    
T  33242799 tccttatagactaagatgactcat 33242776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 354 - 456
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 13886592  T
Q  454 aat 456  Q
    |||    
T  13886591 aat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16548160 - 16548077
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  16548160 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 16548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 17830081 - 17830143
Alignment:
Q  4 ttcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgact 66  Q
    ||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  17830081 ttcttgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgact 17830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 16442442 - 16442511
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||  |||| |||||||    
T  16442442 gttgatattgtttggataatttgaatgaaaattgattttgaatgtgtaatgaccaaactatccttttaat 16442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 507 - 577
Target Start/End: Complemental strand, 13886585 - 13886515
Alignment:
Q  507 gcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 577  Q
    |||||| |||||||| ||||| | ||| |||||| ||||||| |||||| ||||||| |||||||||||||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcat 13886515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31132485 - 31132432
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||||| | ||||||| ||||||| ||| |||||||||||||||||||||||    
T  31132485 tgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaa 31132432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 21455884 - 21455820
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||||| ||| |||||||||||||| ||||| ||||||||| || |||  ||||||||||||||    
T  21455884 ttgtttgcatagtttgaatcaaaattaattttaaatgtgtaatgattaaattatctttttaattg 21455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 33899120 - 33899168
Alignment:
Q  36 aatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  33899120 aatcaaaattgattttgaatgtgtaatgaccaaaatatccttttaattg 33899168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 26274728 - 26274762
Alignment:
Q  23 tttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||||||||||||| ||||||||||    
T  26274728 tttgaataatttgaatcaaaattgcttttgaatgt 26274762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 6e-76; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 353 - 577
Target Start/End: Complemental strand, 8123679 - 8123455
Alignment:
Q  353 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    |||||||||  ||||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctca 8123580  T
Q  453 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 552  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | | |||||||    
T  8123579 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatcttctag 8123480  T
Q  553 atccttctagactaaggtgagtcat 577  Q
    ||||||||||| |||||| ||||||    
T  8123479 atccttctagattaaggtcagtcat 8123455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 619 - 745
Target Start/End: Complemental strand, 4287567 - 4287441
Alignment:
Q  619 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatc 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4287567 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatc 4287468  T
Q  719 gttaaacatatagatttgagatttcat 745  Q
    |||||||||||||||||||||||||||    
T  4287467 gttaaacatatagatttgagatttcat 4287441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 364 - 577
Target Start/End: Complemental strand, 671602 - 671389
Alignment:
Q  364 caattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 462  Q
    |||||||||| ||||||||||| ||||| | | || |||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||  ||    
T  671602 caattcgagttgggatcacacttcagaaatta-agagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  463 tacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctag 562  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||| ||| | |||||||||||    
T  671503 tacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctag 671404  T
Q  563 actaaggtgagtcat 577  Q
    | |||||||||||||    
T  671403 attaaggtgagtcat 671389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4292184 - 4292038
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  4292184 tgattcttgttggttgatattgtttggataatttgaatcaaaattaattttgaatgtgtaatgactgatatatc-ttttaattgaaaccaaattatctaa 4292086  T
Q  101 tactccaaaacccaatagtnnnnnnnttcctgccaactatagcaaccag 149  Q
    |||||||||||||||||||       |||||||||||||||||||||||    
T  4292085 tactccaaaacccaatagt-aaaaaattcctgccaactatagcaaccag 4292038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 353 - 481
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  353 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattctca 41709552  T
Q  453 taataaaacatacaatgcttatatagact 481  Q
    ||||||  ||||||||| |||||||||||    
T  41709551 taataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 240 - 327
Target Start/End: Complemental strand, 4287658 - 4287571
Alignment:
Q  240 gaccaaggcctatattactagggtatgagtaatcgatagtcagcacagagagatgacaaaacagaagaatatagttttagggagcaag 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4287658 gaccaaggcctatattactagggtatgagtaatcgatagtcagcacagagagatgacaaaacagaagaatttagttttagggagcaag 4287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 24108848 - 24108697
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||| ||||| ||||||| ||   |||| |||||||||||||| ||||||  |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta-aggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  453 taataaaacatacaatgcttatatagacttg-tgcatactcataataacataa 504  Q
    | |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataaaataa 24108697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 16158555 - 16158651
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaaaa 110  Q
    ||||| || |||| || ||||||||||||||||||||||||||||||| ||  || ||||  |||||||| |||| |||||||||||||||||||||    
T  16158555 ttgatgttctttggatgatttgaatcaaaattgattttgaatgtgtaatgatcaaaatattcttttaattaaaacgaaattatctaatactccaaaa 16158651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22482224 - 22482141
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| |||||||||    
T  22482224 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatgactaaactatccttttaattg 22482141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattat 434  Q
    ||||||||  ||||| ||||||||||||||||||| |||| |||| || || ||||||| ||||||||| |||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 32030739 - 32030684
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  32030739 gttgatgttgtttgaatagtttgaatcaaaattgattttgaaggtgtaatgactaa 32030684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 40885233 - 40885185
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||||||| ||| |||||||||||||||||||||||| |||||    
T  40885233 gttgatattgtttggatagtttgaatcaaaattgattttgaatatgtaa 40885185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 2430385 - 2430440
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  2430385 gttgatgttgtttggatagtttgaatcaaaattgattttgagtgtgtaatgactaa 2430440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 9275573 - 9275644
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| || |||||||| ||| |||||||||||||||||| ||| ||  ||||||||||||||    
T  9275573 gttgatgttgtttggatgatttgaatgaaacttgattttgaatgtgtaatgaccaaattatctttttaattg 9275644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 33953990 - 33954065
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaac 88  Q
    |||||| ||||| | ||| |||||||||||||| ||||||||||||||| ||||||  |||| |||||||| ||||    
T  33953990 gttgatgttgttcggatagtttgaatcaaaattaattttgaatgtgtaatgactaaattatccttttaattaaaac 33954065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 13253171 - 13253212
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  13253171 gttgatgttgtttgaatagtttgaatcaaaattgattttgaa 13253212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 40495453 - 40495538
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactc 105  Q
    ||||||||||| ||| ||||||||||||||| ||||||  || ||  ||  |||| |||||||| ||||||||||||| |||||||    
T  40495453 ttgtttgaatagtttaaatcaaaattgatttggaatgtacaatgatcaaattatccttttaattaaaaccaaattatcaaatactc 40495538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 2694857 - 2694897
Alignment:
Q  21 tgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  2694857 tgtttgtataatttgaatcaaaattgattttgagtgtgtaa 2694897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 2861653 - 2861617
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatg 56  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2861653 ttgtttgaataatttggatcaaaattgattttgaatg 2861617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 3060318 - 3060358
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgta 60  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  3060318 ttgtttggatagtttgaatcaaaattgattttgaatgtgta 3060358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 3667877 - 3667833
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  3667877 gttgatattgtttggatagtttgaatcaaaattgattttaaatgt 3667833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 35760212 - 35760168
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  35760212 gttgatattgtttggatagtttgaatcaaaattgattttaaatgt 35760168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 24045855 - 24045784
Alignment:
Q  12 ggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    ||||||| ||||||| ||||||||||| ||||||||||||||| ||  || ||||||  |||| ||||||||    
T  24045855 ggttgatgttgtttggataatttgaattaaaattgattttgaacgtacaatgactaaattatccttttaatt 24045784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 10058096 - 10058026
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||| ||| |||||| ||  |||| |||||||||    
T  10058096 ttgatgttgtttggatagtttgaatgaaaattgattttgaacgtgcaacgaccaaattatcattttaattg 10058026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 41834914 - 41834844
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||||||| || ||| ||  |||| |||||||||    
T  41834914 ttgatgttgtttggatagtttgaatgaaaattgattttgaatgtgcaatgaccaaattatccttttaattg 41834844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 7714963 - 7714894
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||| || ||| ||||||  |||| |||||||    
T  7714963 gttgatgttgtttggatagtttgaattaaaattgattttgaaagtataatgactaaattatccttttaat 7714894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 3e-59; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 354 - 577
Target Start/End: Original strand, 18583886 - 18584109
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    ||||||||  |||||||||||| ||| ||||||||||| || |||| || |||||||||| || |||||| ||||||| |||||| |||||| |||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagaga-aaactagagataaaagaaaggaaattcagtatatttttcattgattctca 18583984  T
Q  453 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 552  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||||||| ||||||||| || ||||||| |||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag 18584084  T
Q  553 atccttctagactaaggtgagtcat 577  Q
    ||||||||||| |||||||||||||    
T  18584085 atccttctagattaaggtgagtcat 18584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 354 - 504
Target Start/End: Original strand, 23405475 - 23405625
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 23405574  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 504  Q
    |||||  ||||||||| ||| |||||||||||||||| |||| ||| ||||    
T  23405575 aataaggcatacaatgtttagatagacttgtgcatacacatagtaagataa 23405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 12468239 - 12468151
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 108  Q
    ||||||| ||| ||||||||||||||||||||||||||  || ||| ||  |||| |||||||| ||||||||||||| ||||||||||    
T  12468239 ttgtttggatagtttgaatcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaaccaaattatcaaatactccaa 12468151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1199872 - 1199793
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatcttttta 80  Q
    |||||||||| | ||||| ||||||| ||| ||||||||||||||||||||||| |||||| ||||||  ||||||||||    
T  1199872 tgattcttgtggattgatgttgtttggatagtttgaatcaaaattgattttgaacgtgtaatgactaaactatcttttta 1199793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35569283 - 35569366
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| |||||||||    
T  35569283 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatgactaaactatcattttaattg 35569366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 354 - 444
Target Start/End: Original strand, 21075941 - 21076031
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 444  Q
    |||||||||  ||||||||||||||| ||||||||||||| || | ||||||||| ||| || |||||| ||||||| |||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcatt 21076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 40821870 - 40821778
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||||| || |||||| || |||| |||||||||||||||||||| |||||||||| || ||||||  |||| |||||||| |||| ||||    
T  40821870 tgattcttatttgttgatgttatttggataatttgaatcaaaattgagtttgaatgtgcaatgactaaattatccttttaattaaaactaaat 40821778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 20800358 - 20800441
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||| ||||||||||||||| ||| ||||||  |||| |||||||||    
T  20800358 tgattcatgtgggttgatgttgtttggatagtttgaatcaatattgattttgaatgtataatgactaaattatccttttaattg 20800441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 40229563 - 40229632
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    |||||| ||||||| ||||||||||||||||||||||||||| |||||| ||| ||  |||| |||||||    
T  40229563 gttgatgttgtttggataatttgaatcaaaattgattttgaacgtgtaatgaccaaactatccttttaat 40229632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 6464641 - 6464561
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| || ||||| |||| ||||    
T  6464641 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtctaatgactaaattatccttataattaaaactaaat 6464561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 45710082 - 45710002
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| || ||||| |||| ||||    
T  45710082 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtctaatgactaaattatccttataattaaaactaaat 45710002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 50977435 - 50977487
Alignment:
Q  16 gatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  50977435 gatattgtttggatagtttgaataaaaattgattttgaatgtgtaatgactaa 50977487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 514 - 577
Target Start/End: Complemental strand, 13087696 - 13087634
Alignment:
Q  514 aacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 577  Q
    ||||||||| |||| |||||||||||| ||||||||||||| | |||||| |||||||||||||    
T  13087696 aacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcat 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25230052 - 25229970
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||||| || |||||| ||||||| ||| ||||||| |||||||||||||| ||||||| ||| ||  |||| ||||||||    
T  25230052 tgattcttattagttgatgttgtttggatagtttgaatgaaaattgattttgagtgtgtaatgaccaaattatccttttaatt 25229970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 35536105 - 35536064
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  35536105 gttgatgttgtttggataatttgaatcaaaattgattttgaa 35536064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 9893883 - 9893803
Alignment:
Q  364 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 444  Q
    ||||| ||||||| |||||||| || |||| || |  ||||||||||||  | ||||||||||||||||||||| ||||||    
T  9893883 caatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaagaaaattcattatatttttcatt 9893803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 13056031 - 13055983
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||| ||||    
T  13056031 gttgatattgtttggatagtttgaataaaaattgattttgaatgcgtaa 13055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 13931656 - 13931608
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| |||||||||||||||||||||||| |||||    
T  13931656 gttgatgttgtttggatagtttgaatcaaaattgattttgaatatgtaa 13931608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 31223407 - 31223359
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||||||||||    
T  31223407 gttgatgttgtttggatagtttgaattaaaattgattttgaatgtgtaa 31223359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 4369895 - 4369966
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| |||  ||||||||||||||||||| ||||||||| ||| ||  |||| |||||||||    
T  4369895 gttgatgttgtttggataggttgaatcaaaattgattttaaatgtgtaatgaccaaattatccttttaattg 4369966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 11051410 - 11051473
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    ||||||| ||| ||||||| |||||||||||||||||||||| ||| ||  |||| ||||||||    
T  11051410 ttgtttggatagtttgaataaaaattgattttgaatgtgtaatgaccaaattatccttttaatt 11051473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 481
Target Start/End: Complemental strand, 13087817 - 13087701
Alignment:
Q  364 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattatt-cattcattctcataataaaaca 462  Q
    |||||||| |||| ||||||||||||||||  ||| |||    || ||| || |||||  ||||||||| |||| || ||||||||||||||||||  ||    
T  13087817 caattcgaataggtatcacactccagaatttcgagagaggt--taaagataaaagaaaataaattcattgtattttttcattcattctcataataaggca 13087720  T
Q  463 tacaatgcttatatagact 481  Q
    |||||| ||||||||||||    
T  13087719 tacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 5410672 - 5410602
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||| ||||||| ||| ||||||||| |||||||||||||| ||||| ||| ||  |||| |||||||||    
T  5410672 ttgatgttgtttggatagtttgaatcataattgattttgaatatgtaatgaccaaactatccttttaattg 5410602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7826448 - 7826518
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||| ||||||| |||  ||||||||||||||||||| ||||||||| ||| ||  |||| |||||||||    
T  7826448 ttgatgttgtttggataggttgaatcaaaattgattttaaatgtgtaatgaccaagttatccttttaattg 7826518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 43728970 - 43729012
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaat 55  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||    
T  43728970 gttgatgttgtttggatagtttgaatcaaaattgattttgaat 43729012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 12247453 - 12247412
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||| ||||||| | |||||||||||||||||||||||||    
T  12247453 gttgatgttgtttggagaatttgaatcaaaattgattttgaa 12247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 354 - 495
Target Start/End: Complemental strand, 44762117 - 44761976
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttcat 44762018  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcata 495  Q
    |||||  ||||||||| |||||||||||||||||||| ||||    
T  44762017 aataaggcatacaatgtttatatagacttgtgcatacacata 44761976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 354 - 495
Target Start/End: Complemental strand, 44765424 - 44765283
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttcat 44765325  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcata 495  Q
    |||||   |||||||| |||||||||||||||||||| ||||    
T  44765324 aataaggaatacaatgtttatatagacttgtgcatacacata 44765283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 43550920 - 43550837
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  43550920 tgattcttgtgggttgatgttgtttggataatttgaatcaaaattgattttgaatgtgtaaagactaaactatccttttaattg 43550837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 6399200 - 6399271
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||| || ||| ||  ||||||||||||||    
T  6399200 gttgatgttgtttggataattttaatcaaaattgattttgaatgtgcaatgaccaaattatctttttaattg 6399271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 36114132 - 36114173
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  36114132 gttgatattgtttggataatttgaatcaaaattgattttgaa 36114173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 45147342 - 45147383
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  45147342 gttgatattgtttgaataacttgaatcaaaattgattttgaa 45147383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 4941873 - 4941917
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||    
T  4941873 gttgatgttgtttgaataatttgaattaaaattgattttgaatgt 4941917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 26125566 - 26125518
Alignment:
Q  36 aatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||||    
T  26125566 aatcaaaattgattttgaatgtgtaatgacgaaaatatctttttaattg 26125518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 41289138 - 41289193
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatg 56  Q
    |||||||| | ||||||| ||||||| ||| |||||||||||||||||||||||||    
T  41289138 tgattcttataggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 41289193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 28425571 - 28425635
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| ||| ||  |||| |||||||||    
T  28425571 ttgtttggatagtttgaatcaaaattgattttgaacgtgtaatgaccaaactatccttttaattg 28425635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 29023256 - 29023212
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  29023256 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 29023212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 40742141 - 40742093
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||||||    
T  40742141 gttgatattgtttggatgatttgaatgaaacttgattttgaatgtgtaa 40742093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 42149022 - 42148978
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||    
T  42149022 gttgatgttgtttagataatttgaatcaaaattgattttgaatgt 42148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 3097298 - 3097345
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgta 60  Q
    |||||| ||||||| ||| ||||||||||||||||||||||| |||||    
T  3097298 gttgatgttgtttggatagtttgaatcaaaattgattttgaacgtgta 3097345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 41981174 - 41981103
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||| |||||||||||||||||||| ||| || || ||| ||  ||||||||||||||    
T  41981174 gttgatgttgtttggatactttgaatcaaaattgattttaaatatggaatgaccaaactatctttttaattg 41981103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 25698051 - 25698093
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaat 55  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||    
T  25698051 gttgatgttgtttggatagtttgaatcaaaattgattttgaat 25698093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 34342951 - 34342985
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaa 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  34342951 ttgtttggataatttgaatcaaaattgattttgaa 34342985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 26243101 - 26243060
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||    
T  26243101 ttgtttggatagtttgaatcaaaattgattttgaatgcgtaa 26243060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 27649763 - 27649722
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||| ||||||| ||| |||||||||||||||||||||||    
T  27649763 gttgatgttgtttggatagtttgaatcaaaattgattttgaa 27649722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 27387770 - 27387620
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 453  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||  |||||||||||||| ||||||| | || ||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaat 27387671  T
Q  454 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 504  Q
    ||| |  |||||||||||||||||||||||||||| ||| |||||| ||||    
T  27387670 aatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagataa 27387620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 354 - 486
Target Start/End: Original strand, 55322334 - 55322467
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcatta-tattattcattcattctca 452  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||||||| |||| ||||||||| || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  453 taataaaacatacaatgcttatatagacttgtgc 486  Q
    |||| |  ||||||||||||||||||||||||||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgc 55322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 464 - 577
Target Start/End: Original strand, 20441029 - 20441141
Alignment:
Q  464 acaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctaga 563  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||| |||||| |||| || ||||| |||||| |    
T  20441029 acaatgcttgtacagacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaa 20441127  T
Q  564 ctaaggtgagtcat 577  Q
     |||||||||||||    
T  20441128 ttaaggtgagtcat 20441141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16566311 - 16566228
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  16566311 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 16566228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 495
Target Start/End: Complemental strand, 36050813 - 36050673
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  453 taataaaacatacaatgcttatatagacttgtgcatactcata 495  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacata 36050673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 495
Target Start/End: Complemental strand, 36054072 - 36053932
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  453 taataaaacatacaatgcttatatagacttgtgcatactcata 495  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacata 36053932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 14072497 - 14072422
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaac 88  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||| ||||    
T  14072497 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaattatccttttaattaaaac 14072422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 478
Target Start/End: Complemental strand, 24733756 - 24733642
Alignment:
Q  364 caattcgagtagggatcacactccaga-attcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 462  Q
    |||||| |||||||||||||||  ||| ||| |||| || |||||||| | || |||||| |||||||||||||| ||||||| |||| || || |||||    
T  24733756 caattcaagtagggatcacactttagatattaagagaga-aaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaaca 24733658  T
Q  463 tacaatgcttatatag 478  Q
    ||||||||||||||||    
T  24733657 tacaatgcttatatag 24733642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 54153039 - 54152959
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||  |||| || ||||| |||| ||||    
T  54153039 gttgatgttgtttgaatagtttgaatcaaaattgattttgaatgtctaatgactaaattatccttataattaaaactaaat 54152959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 55638879 - 55638950
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| ||  |||| |||||||||    
T  55638879 gttgatattgtttggataatatgaatcaaaattgattttgaatatgtaatgaccaaactatcattttaattg 55638950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 39636779 - 39636709
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||| ||||||| ||| | |||||||||||||||||| ||||||||||||| || ||||| ||||||||    
T  39636779 gttgatgttgtttggatagtatgaatcaaaattgattttaaatgtgtaacgaccaaaatatccttttaatt 39636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 49136516 - 49136472
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  49136516 gttgatgttgtttgaataattttaatcaaaattgattttgaatgt 49136472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 15619622 - 15619540
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||| |||| |||||||||||| ||||||  |||| |||||||||    
T  15619622 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaa-tgatcttgaatgtgtaatgactaaattatcattttaattg 15619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 616
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
Q  581 accacattagtactcattattctaaatatcctatca 616  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050554 accacattagtactcattattctaaatatcctatca 36050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 616
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
Q  581 accacattagtactcattattctaaatatcctatca 616  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053813 accacattagtactcattattctaaatatcctatca 36053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 29149399 - 29149443
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  29149399 gttgatattgtttggatagtttgaatcaaaattgattttaaatgt 29149443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 38694054 - 38693998
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||| | ||||||| ||| ||||||||||| |||||||||| |||||||||||    
T  38694054 tgattcttatgggttgatcttgcttgaataatttaaatcaaaattaattttgaatgt 38693998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 48550519 - 48550567
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| |||||||||||||||||||| |||||||||    
T  48550519 gttgatgttgtttggatagtttgaatcaaaattgattttaaatgtgtaa 48550567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 51922934 - 51922890
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  51922934 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 51922890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 32238150 - 32238205
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||| ||| |||||||||||| ||||||||||||| ||| ||||||    
T  32238150 gttgatgttgtttggatagtttgaatcaaaactgattttgaatgtctaatgactaa 32238205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 56241927 - 56241998
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    ||||||| |||||  || |||| |||||||||||||||||||||| ||| ||| || ||||| |||||||||    
T  56241927 gttgataatgtttagatgatttaaatcaaaattgattttgaatgtataatgaccaaaatatccttttaattg 56241998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 9889433 - 9889495
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    ||||||| ||| ||||||| |||||||||||||||||| ||| ||||||  |||| |||||||    
T  9889433 ttgtttggatagtttgaattaaaattgattttgaatgtataatgactaaattatccttttaat 9889495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 43772215 - 43772285
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||| ||||||| ||||| |||||||||||||||||| | ||||||| ||| ||  |||| ||||||||    
T  43772215 gttgatgttgtttggataatatgaatcaaaattgattttaagtgtgtaatgaccaaactatccttttaatt 43772285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 462 - 577
Target Start/End: Complemental strand, 31211731 - 31211616
Alignment:
Q  462 atacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttcta 561  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta 31211632  T
Q  562 gactaaggtgagtcat 577  Q
    || ||| |||||||||    
T  31211631 gattaaagtgagtcat 31211616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 458
Target Start/End: Complemental strand, 31211963 - 31211859
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 452  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || |||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattctca 31211865  T
Q  453 taataa 458  Q
    ||||||    
T  31211864 taataa 31211859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 370 - 504
Target Start/End: Original strand, 45327420 - 45327554
Alignment:
Q  370 gagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaat 468  Q
    |||||||||||||||||||||| || |||| || ||| |||||| || |||||  ||||| |||||||| ||||||  |||||||||||| |||||||||    
T  45327420 gagtagggatcacactccagaaattaagagaga-aaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaat 45327518  T
Q  469 gcttatatagacttgtgcatactcataataacataa 504  Q
    |||||||||||||||||||||| |||| ||| ||||    
T  45327519 gcttatatagacttgtgcatacacatagtaagataa 45327554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 5916331 - 5916402
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  5916331 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 5916402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 36312295 - 36312224
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattg 84  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||  |||| |||||||||    
T  36312295 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaattg 36312224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 31562778 - 31562822
Alignment:
Q  17 atattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  31562778 atattgtttggataatttgaatcaaaattgattttgaatgtgtaa 31562822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 14821181 - 14821101
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaat 93  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||  |||| || ||||| |||| ||||    
T  14821181 gttgatgttgtttggatattttgaatcaaaattgattttgaatgtctaatgactaaattatccttataattaaaactaaat 14821101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 2213524 - 2213480
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  2213524 gttgatattgtttggatagtttgaatcaaaattgattttaaatgt 2213480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3552940 - 3552984
Alignment:
Q  17 atattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  3552940 atattgtttggataatttgaatcaaaattgatcttaaatgtgtaa 3552984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7472763 - 7472807
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||    
T  7472763 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 7472807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 9988591 - 9988639
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    |||||| ||||||| ||| ||||||| ||||||||||||||||||||||    
T  9988591 gttgatgttgtttggatagtttgaatgaaaattgattttgaatgtgtaa 9988639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 28127377 - 28127421
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||    
T  28127377 gttgatattgtttggatagtttgaatcaaaattgattttaaatgt 28127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 8170331 - 8170276
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||| ||||||| ||| ||||||| |||||||||||||||||| ||| ||||||    
T  8170331 gttgatgttgtttggatagtttgaattaaaattgattttgaatgtataatgactaa 8170276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 31193317 - 31193244
Alignment:
Q  364 caattcgagtagggatcacactccag-aattcagagggagaaactagagaaaagagaaagaaaattcattatatt 437  Q
    ||||||||||||||||||||||| || |||| |||| || ||||||||||  | |||||||||||| ||||||||    
T  31193317 caattcgagtagggatcacactctagaaattaagagaga-aaactagagatgaaagaaagaaaatttattatatt 31193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 42516065 - 42516135
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaatt 83  Q
    |||||| ||||||| ||| ||||||| |||||||||||||||||| |||  || ||  |||||||||||||    
T  42516065 gttgatgttgtttggatagtttgaattaaaattgattttgaatgtataataaccaaattatctttttaatt 42516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1945117 - 1945166
Alignment:
Q  1 tgattcttgttggttgatattgtttgaataatttgaatcaaaattgattt 50  Q
    |||||| ||| ||||||| ||||||| ||| |||||||||||||||||||    
T  1945117 tgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattt 1945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 3853911 - 3853870
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaa 61  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  3853911 ttgtttggatagtttgaatcaaaattgcttttgaatgtgtaa 3853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 18511118 - 18511077
Alignment:
Q  15 tgatattgtttgaataatttgaatcaaaattgattttgaatg 56  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  18511118 tgatgttgtttggataatttaaatcaaaattgattttgaatg 18511077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 23358269 - 23358232
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgt 57  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  23358269 ttgtttggatagtttgaatcaaaattgattttgaatgt 23358232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 39141559 - 39141600
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaa 54  Q
    |||||| ||||||| ||| |||||||||||||||||||||||    
T  39141559 gttgatgttgtttggatagtttgaatcaaaattgattttgaa 39141600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 40400909 - 40400946
Alignment:
Q  354 tgatacgattcaattcgagtagggatcacactccagaa 391  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaa 40400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 8458 - 8363
Alignment:
Q  13 gttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaattgaaaccaaattatctaatactccaa 108  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||||  || ||| ||  |||| |||||||| ||| ||||||||| ||||||||||    
T  8458 gttgatgttgtttggatagtttgaatcaaaattgattttgaatgtacaatgaccaaattatccttttaattaaaatcaaattatcaaatactccaa 8363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 29215 - 29269
Alignment:
Q  14 ttgatattgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  29215 ttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaa 29269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5906 - 5978
Alignment:
Q  1 tgattcttgttggttgatattgtttgaata-----atttgaatcaaaattgattttgaatgtgtaacgactaa 68  Q
    |||||||||| ||||||| ||||||| |||     ||||||||||||||||||||||||||||||| ||||||    
T  5906 tgattcttgtgggttgatgttgtttggatagtttaatttgaatcaaaattgattttgaatgtgtaatgactaa 5978  T

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Target: scaffold0381 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 9113 - 9051
Alignment:
Q  20 ttgtttgaataatttgaatcaaaattgattttgaatgtgtaacgactaatatatctttttaat 82  Q
    ||||||| ||| ||||||| |||||||||||||||||| ||| ||||||  |||| |||||||    
T  9113 ttgtttggatagtttgaattaaaattgattttgaatgtataatgactaaattatccttttaat 9051  T

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