View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_high_20 (Length: 437)

Name: NF3103_high_20
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_high_20
NF3103_high_20
[»] chr1 (9 HSPs)
chr1 (3-331)||(7241321-7241649)
chr1 (340-423)||(14479551-14479634)
chr1 (340-418)||(51445587-51445665)
chr1 (341-418)||(14478264-14478341)
chr1 (364-423)||(28051643-28051702)
chr1 (342-423)||(51446879-51446960)
chr1 (344-424)||(40533639-40533719)
chr1 (339-423)||(28050317-28050401)
chr1 (339-417)||(40634733-40634811)
[»] chr7 (6 HSPs)
chr7 (339-418)||(41328215-41328294)
chr7 (341-423)||(41329506-41329588)
chr7 (339-418)||(39981313-39981392)
chr7 (340-418)||(35296859-35296937)
chr7 (365-416)||(32653485-32653536)
chr7 (342-397)||(32653729-32653784)
[»] chr4 (13 HSPs)
chr4 (339-424)||(8363424-8363509)
chr4 (339-418)||(26496350-26496429)
chr4 (357-418)||(56156949-56157010)
chr4 (343-423)||(36243519-36243599)
chr4 (340-409)||(20625554-20625623)
chr4 (339-424)||(56157531-56157616)
chr4 (357-413)||(20620153-20620209)
chr4 (339-423)||(26495118-26495202)
chr4 (339-418)||(52137422-52137501)
chr4 (339-417)||(36244809-36244887)
chr4 (340-393)||(11385717-11385770)
chr4 (360-405)||(52138848-52138893)
chr4 (340-396)||(44491718-44491774)
[»] chr5 (4 HSPs)
chr5 (340-424)||(11796566-11796650)
chr5 (341-413)||(23325910-23325982)
chr5 (339-409)||(23334017-23334087)
chr5 (339-424)||(11797568-11797653)
[»] scaffold0114 (1 HSPs)
scaffold0114 (341-423)||(38538-38620)
[»] chr3 (6 HSPs)
chr3 (341-423)||(13621994-13622076)
chr3 (340-417)||(49379698-49379775)
chr3 (339-418)||(13620916-13620995)
chr3 (340-418)||(49380995-49381073)
chr3 (341-418)||(14744061-14744138)
chr3 (339-396)||(38524350-38524407)
[»] chr2 (10 HSPs)
chr2 (340-418)||(4921099-4921177)
chr2 (339-423)||(28610018-28610102)
chr2 (339-424)||(19397526-19397611)
chr2 (339-418)||(28611293-28611372)
chr2 (366-418)||(45699523-45699575)
chr2 (341-423)||(4919825-4919907)
chr2 (360-417)||(8321285-8321342)
chr2 (364-424)||(19398835-19398895)
chr2 (382-417)||(45699568-45699603)
chr2 (341-394)||(5062200-5062253)
[»] scaffold0219 (1 HSPs)
scaffold0219 (339-418)||(6891-6970)
[»] chr8 (4 HSPs)
chr8 (339-418)||(9854920-9854999)
chr8 (339-424)||(42793695-42793780)
chr8 (339-418)||(9853563-9853642)
chr8 (341-424)||(38697154-38697237)
[»] chr6 (2 HSPs)
chr6 (341-418)||(11722784-11722861)
chr6 (373-413)||(21777530-21777570)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 3 - 331
Target Start/End: Complemental strand, 7241649 - 7241321
Alignment:
Q  3 tcttgtgaaatctctcacggttttgtcatttgtaaaagacatcttattgaattgagaagtgtagattttgtatatgaactacactttgtaaaagagatga 102  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241649 tcttgtgaaatctttcacggttttgtcatttgtaaaagatatcttattgaattgagaagtgtagattttgtatatgaactacactttgtaaaagagatga 7241550  T
Q  103 tctcacattaatccttccatgtaacattctccaaatgaagtgagtatgaagagagatggtttttagtttccagattttagtccacactaaaatttcattc 202  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7241549 cctcacattaatccttccatgtaacattctccaaatgaagtgagtatgaagagagatggtttttagtttccagattttagtccacactaaaacttcattc 7241450  T
Q  203 ttatccttcaaaaatttatatgccagcttcaccgataacacacaatttttgttagctccccatataaatgtgtcatttgatttccgaaggaaatgagaat 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241449 ttatccttcaaaaatttatatgccagcttcaccgataaaacacaatttttgttagctccccatataaatgtgtcatttgatttccgaaggaaatgagaat 7241350  T
Q  303 ttgaaggatttgctttacttcaaaccggt 331  Q
    ||||||||||||| |  ||||||||||||    
T  7241349 ttgaaggatttgcgtcgcttcaaaccggt 7241321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 340 - 423
Target Start/End: Complemental strand, 14479634 - 14479551
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    ||||||||||| |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14479634 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 14479551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 51445587 - 51445665
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51445587 aggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttg 51445665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 14478264 - 14478341
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||| |||  |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  14478264 ggcttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttg 14478341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 364 - 423
Target Start/End: Complemental strand, 28051702 - 28051643
Alignment:
Q  364 ctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28051702 ctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccc 28051643  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 423
Target Start/End: Complemental strand, 51446960 - 51446879
Alignment:
Q  342 gcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    ||||||||| |||  ||||||||||||||||||||  |||||||||||||| ||||||||||||||| ||||||||| ||||    
T  51446960 gcttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccc 51446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 40533719 - 40533639
Alignment:
Q  344 ttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    |||||||||  |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||  |||||||| |||||    
T  40533719 ttaattgcatcaatggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccct 40533639  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 28050317 - 28050401
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||||  |||  ||||||  |||||||||||| ||||||||||||||||||||||||||||||  ||||||||| ||||    
T  28050317 taggcttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccc 28050401  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 40634811 - 40634733
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacatttt 417  Q
    |||| |||||| || ||||||||| ||||||||||   ||||||||||||| ||| ||||||  |||||||||||||||    
T  40634811 taggtttaatttcataaatggtcccctaaataatttgcagtttacattttgatccgataaatcataaaactcacatttt 40634733  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 41328215 - 41328294
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41328215 taggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttg 41328294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 41329588 - 41329506
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  41329588 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 41329506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 39981313 - 39981392
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||  || |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||    
T  39981313 taggcttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttg 39981392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 35296937 - 35296859
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||||||||| | |||| |||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||    
T  35296937 aggcttaattgtataaatagtcctctaaataatttgtagtttacattttggtcctataaattgtaaaactcacattttg 35296859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 32653485 - 32653536
Alignment:
Q  365 taaataattatgagtttacattttggtcccataaattgtaaaactcacattt 416  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  32653485 taaataattatgcgtttacattttggtctcataaattgtaaaactcacattt 32653536  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 397
Target Start/End: Complemental strand, 32653784 - 32653729
Alignment:
Q  342 gcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccata 397  Q
    ||||||||| |||  |||||| |||||||||||||  |||||||||||||||||||    
T  32653784 gcttaattggacatttggtcccctaaataattatgtatttacattttggtcccata 32653729  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 8363509 - 8363424
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    |||||||||||| |||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  8363509 taggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccct 8363424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 26496429 - 26496350
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||  ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26496429 taggcttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttg 26496350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 56156949 - 56157010
Alignment:
Q  357 tggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56156949 tggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 56157010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 36243519 - 36243599
Alignment:
Q  343 cttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||| |||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  36243519 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 36243599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 20625623 - 20625554
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaact 409  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20625623 aggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 20625554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 56157616 - 56157531
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    |||||||||||| | |  |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| |||||    
T  56157616 taggcttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccct 56157531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 20620153 - 20620209
Alignment:
Q  357 tggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcaca 413  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20620153 tggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 20620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 26495118 - 26495202
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||||| | |  |||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  26495118 taggcttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccc 26495202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 52137422 - 52137501
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| | |  |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  52137422 taggcttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttg 52137501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 36244887 - 36244809
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacatttt 417  Q
    |||||||||||| | |  |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36244887 taggcttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttt 36244809  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 393
Target Start/End: Complemental strand, 11385770 - 11385717
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcc 393  Q
    |||||||||| || |||||||||| |||||||||||||| || || ||||||||    
T  11385770 aggcttaattacataaatggtcctttaaataattatgagatttcaatttggtcc 11385717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 52138893 - 52138848
Alignment:
Q  360 tcctctaaataattatgagtttacattttggtcccataaattgtaa 405  Q
    ||||||||||||||||| ||||| |||||| || ||||||||||||    
T  52138893 tcctctaaataattatgcgtttatattttgatcacataaattgtaa 52138848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 44491718 - 44491774
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccat 396  Q
    |||||||||| || |||||||||  |||||||||||||| || || |||||||||||    
T  44491718 aggcttaattacataaatggtcccttaaataattatgagatttcaatttggtcccat 44491774  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 11796566 - 11796650
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    ||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  11796566 aggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggtccct 11796650  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 23325910 - 23325982
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcaca 413  Q
    |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23325910 ggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcaca 23325982  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 23334087 - 23334017
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaact 409  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23334087 taggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaact 23334017  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 11797653 - 11797568
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    |||||||||||| |||  |||||| ||||||||||||||||||||||||||||| ||||| | ||||||   |||||||| |||||    
T  11797653 taggcttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccct 11797568  T

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Target: scaffold0114 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 38538 - 38620
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||| |||  |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  38538 ggcttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccc 38620  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 13622076 - 13621994
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  13622076 ggcttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccc 13621994  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 49379698 - 49379775
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacatttt 417  Q
    ||||||||||| |||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  49379698 aggcttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacatttt 49379775  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 13620916 - 13620995
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||  |||  |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13620916 taggcttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttg 13620995  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 49381073 - 49380995
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||||||||| | |  |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  49381073 aggcttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttg 49380995  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 14744061 - 14744138
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||| |||| | |||| |||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||    
T  14744061 ggcttgattgtataaatagtcctctaaataattcgcggtttacattttggtctcataaattgtaaaactcacattttg 14744138  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 38524350 - 38524407
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccat 396  Q
    ||||||||||| || |||||||||  ||| |||||||||| || ||||||||||||||    
T  38524350 taggcttaattacataaatggtcccttaactaattatgagatttcattttggtcccat 38524407  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 4921177 - 4921099
Alignment:
Q  340 aggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||||||||| |||  |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4921177 aggcttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttg 4921099  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 28610018 - 28610102
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||||| |||  |||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28610018 taggcttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccc 28610102  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 19397526 - 19397611
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    ||||||||||||||  |||||||| |||||||||||  ||||||||||||||||||||||||| ||||||| |||||||| |||||    
T  19397526 taggcttaattgcatcaatggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccct 19397611  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 28611372 - 28611293
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| | |  |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  28611372 taggcttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttg 28611293  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 45699523 - 45699575
Alignment:
Q  366 aaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttg 45699575  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 4919825 - 4919907
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccc 423  Q
    |||||||||| |||  ||||||||||||||||||||  |||||| |||||||||||||||| |||||  ||||||||| ||||    
T  4919825 ggcttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccc 4919907  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 8321342 - 8321285
Alignment:
Q  360 tcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacatttt 417  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||  |||||||    
T  8321342 tcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacatttt 8321285  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 19398895 - 19398835
Alignment:
Q  364 ctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    |||||||||||   |||||||||||||||||||||||||||||||  |||||||| |||||    
T  19398895 ctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccct 19398835  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 45699568 - 45699603
Alignment:
Q  382 acattttggtcccataaattgtaaaactcacatttt 417  Q
    |||||||||| |||||||||||||||||||||||||    
T  45699568 acattttggttccataaattgtaaaactcacatttt 45699603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 5062253 - 5062200
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtccc 394  Q
    ||||||||| || |||||||||  |||||||||||||| || ||||||||||||    
T  5062253 ggcttaattacataaatggtcccttaaataattatgagatttcattttggtccc 5062200  T

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Target: scaffold0219 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 6891 - 6970
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||  |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  6891 taggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttg 6970  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 9854999 - 9854920
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||  |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  9854999 taggcttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttg 9854920  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 42793695 - 42793780
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    ||||||||||||||  ||||| || |||||||||||  |||||| |||||||||||||||||||||||| | |||||||| |||||    
T  42793695 taggcttaattgcattaatggccccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccct 42793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 9853563 - 9853642
Alignment:
Q  339 taggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||||| |||   | |||| |||||||||||  ||||| |||||||||||||||||||||||||| | ||||||    
T  9853563 taggcttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttg 9853642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 424
Target Start/End: Original strand, 38697154 - 38697237
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttgatccct 424  Q
    ||||||||||||  | ||||||  ||||||||||| | |||||||||||||| |||||||| ||||||  |||||||| |||||    
T  38697154 ggcttaattgcattagtggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtccct 38697237  T

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Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 11722784 - 11722861
Alignment:
Q  341 ggcttaattgcacaaatggtcctctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttg 418  Q
    |||||||||| |||  || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  11722784 ggcttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttg 11722861  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 21777570 - 21777530
Alignment:
Q  373 tatgagtttacattttggtcccataaattgtaaaactcaca 413  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcaca 21777530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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