View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_31 (Length: 384)
Name: NF3103_high_31
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_31 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 15472987 - 15473357
Alignment:
| Q |
14 |
aaatataaaaccatagattaaaacgtgaataaaatatgcatctatttataagtttctttcttagtgttcagtgaactcttaatctcaacaacaattgatg |
113 |
Q |
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| T |
15472987 |
aaatataaaaccatagattaaaacatgaataaaatatgcatttatttataagtttctttctccgtgtttagtgaactcttaatctcaacaataattgatg |
15473086 |
T |
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| Q |
114 |
aattttattagtatgtcatacgctctcatccaccaatattaacttgctaacgtgcatatcatacacaccttagtttttggatgaatgcatccaactatca |
213 |
Q |
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| T |
15473087 |
aattttattagtatgtcatacgctctcatccaccaatattaacttgctaacatgcatatcatacacaccttggtttttggatgaatgcatccaactttca |
15473186 |
T |
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| Q |
214 |
tgtttacactcaagtcatggattcgtcatgacgttaagtattactttttaatatatgtgagttgatcaaatatatcagttattttcagacgagtgaaata |
313 |
Q |
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| T |
15473187 |
tgtttacactcaagtcatggatccgtcatgacgttaagtattactttttaatatatgtgagttgatcaaatatatcagttattttcaaacgagtgaaata |
15473286 |
T |
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| Q |
314 |
ttatttatcgatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaacttataaa |
384 |
Q |
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| T |
15473287 |
ttatttatcgatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaacatataaa |
15473357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 106 - 384
Target Start/End: Original strand, 15463142 - 15463418
Alignment:
| Q |
106 |
aattgatgaattttattagtatgtcatacgctctcatccaccaatattaacttgctaacgtgcatatcatacacaccttagtttttggatgaatgcatcc |
205 |
Q |
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| T |
15463142 |
aattgatgaattttattaggatatcatacgctctctcccaccaacattaactaattaacatgcatatcatacaaacctttgtttttgggtgaatgcatcc |
15463241 |
T |
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| Q |
206 |
aactatcatgtttacactcaagtcatggattcgtcatgacgttaagtattactttttaatatatgtgagttgatcaaatatatcagttattttcagacga |
305 |
Q |
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| || | ||||||| || ||| ||||||| |||| || ||| |||||||||||||||| ||||| |||||||||||| || | |||||| ||||| |
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| T |
15463242 |
accttccttgtttaccctaaagacatggatctatcataacactaa-tattactttttaatatgtgtgaattgatcaaatatgtcggatattttgggacga |
15463340 |
T |
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| Q |
306 |
gtgaaatattatttatcgatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaacttataaa |
384 |
Q |
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| T |
15463341 |
gtgaaatattatttatcgatattgat-tatcttcaaattttcaaattaaaagtgagaaagaaatatgtgaacatataaa |
15463418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 15464126 - 15464344
Alignment:
| Q |
110 |
gatgaattttattagtatgtcatacgctctcatccaccaatattaacttgctaacgtgcatatcatacacaccttagtttttggatgaatgcatccaact |
209 |
Q |
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| T |
15464126 |
gatgaattttattagtatctcatacgctctcacccgccaacattaactaattaacatgcatatcatacaaaccttgatttttgggtgaatgcatccacct |
15464225 |
T |
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| Q |
210 |
atcatgtttacactcaagtcatggattcgtcatgacgttaagtattactttttaatatatgtgagttgatcaaatatatcagttattttcagacgagtga |
309 |
Q |
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| T |
15464226 |
tccttgtttatcctgaagacatggatctatcataacactaa-tattactttttaatatgtgtgaattggttaaatatgtcagatattttgggacgagtga |
15464324 |
T |
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| Q |
310 |
aatattatttatcgatattg |
329 |
Q |
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| T |
15464325 |
aatattatttatcgatattg |
15464344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 15427008 - 15427084
Alignment:
| Q |
301 |
gacgagtgaaatattatttatcgatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaac |
377 |
Q |
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| T |
15427008 |
gacgaatgaaatattatttatcgatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaac |
15427084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 15459897 - 15460001
Alignment:
| Q |
281 |
aaatatatcagttattttcagacgagtgaaatattatttatcgatattgatatatcttcaatttttc-aaattaaaagtttgaaagaaatacatgaactt |
379 |
Q |
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|||||| | ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||| | ||| | |
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| T |
15459897 |
aaatatgttagttattttgggacaagtgaaatattatttattgatattgatatatcttcaattttccaaaattaaaagtttaaaagaaatacgtaaacat |
15459996 |
T |
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| Q |
380 |
ataaa |
384 |
Q |
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| T |
15459997 |
ataaa |
15460001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 15465126 - 15465186
Alignment:
| Q |
323 |
gatattgatatatcttcaatttttcaaattaaaagtttgaaagaaatacatgaacttataa |
383 |
Q |
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| T |
15465126 |
gatattgatatatcttcaaattttcaaattaaaagtgtgaaagaaatacgtgaacatataa |
15465186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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