View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_high_33 (Length: 372)

Name: NF3103_high_33
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_high_33
NF3103_high_33
[»] chr5 (3 HSPs)
chr5 (30-366)||(42743468-42743805)
chr5 (83-117)||(18147723-18147757)
chr5 (84-121)||(26998052-26998089)
[»] chr4 (11 HSPs)
chr4 (79-121)||(33413348-33413390)
chr4 (83-121)||(7272521-7272559)
chr4 (80-122)||(9259508-9259550)
chr4 (83-121)||(12439665-12439703)
chr4 (80-129)||(18915065-18915115)
chr4 (83-121)||(29808290-29808328)
chr4 (83-121)||(42756128-42756166)
chr4 (87-116)||(32293117-32293146)
chr4 (83-116)||(36203242-36203275)
chr4 (82-127)||(51760270-51760315)
chr4 (83-115)||(46434782-46434814)
[»] chr7 (3 HSPs)
chr7 (86-121)||(42336071-42336106)
chr7 (83-117)||(8227354-8227388)
chr7 (83-116)||(39926560-39926593)
[»] chr3 (5 HSPs)
chr3 (83-129)||(45096018-45096065)
chr3 (83-121)||(4216421-4216459)
chr3 (83-121)||(9274712-9274750)
chr3 (85-119)||(48291971-48292005)
chr3 (79-116)||(46469283-46469320)
[»] chr8 (2 HSPs)
chr8 (83-121)||(42208491-42208529)
chr8 (83-116)||(14181370-14181403)
[»] chr6 (6 HSPs)
chr6 (83-121)||(8138480-8138518)
chr6 (83-117)||(10999155-10999189)
chr6 (83-116)||(18256889-18256922)
chr6 (83-116)||(20568313-20568346)
chr6 (83-116)||(33824887-33824920)
chr6 (83-119)||(5008842-5008878)
[»] chr2 (7 HSPs)
chr2 (83-117)||(39761443-39761477)
chr2 (66-115)||(5980234-5980283)
chr2 (67-116)||(9459063-9459112)
chr2 (83-116)||(10332297-10332330)
chr2 (86-119)||(28163930-28163963)
chr2 (83-116)||(39068730-39068763)
chr2 (83-127)||(28771577-28771621)
[»] chr1 (4 HSPs)
chr1 (83-121)||(2817395-2817433)
chr1 (79-116)||(17396714-17396751)
chr1 (77-129)||(6645206-6645258)
chr1 (83-119)||(34253735-34253771)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 42743805 - 42743468
Alignment:
Q  30 gtgtatatttactctcttttttgtgtgcctgaggtccgaactttggaatttgaatatattatgcaatgtccttatcaactgagctaaattcaggg-gaca 128  Q
    ||||||||||||||||||||||||||| ||| |||||||||| | ||| |||||||||||||||||||| |||| ||||||||||||| ||| || |||     
T  42743805 gtgtatatttactctcttttttgtgtgtctgcggtccgaactcttgaacttgaatatattatgcaatgttcttaccaactgagctaaactcaaggagacg 42743706  T
Q  129 tgtatatctactctaatgtatgttgatatataagtaacgaatgtttgtttccattagagcaaggtctcaaattcaggttttctaatcataaagaatccaa 228  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743705 tgtgtatctactctaatgtatgttgatatataagtaacgaatgtttgtttccattagagcaaggtctcaaattcaggttttctaatcataaagaatccaa 42743606  T
Q  229 tataaattctaaaaataaagattttaatgctattcatatcaaataaataaaagtcaatggagtgttctttcaagaatacaaaatgaaaattacacgcaca 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743605 tataaattctaaaaataaagattttaatgctattcatatcaaataaataaaagtcaatggagtgttctttcaagaatacaaaatgaaaattacacgcaca 42743506  T
Q  329 atgattgtgacaatgctaaagcaattcacgcatcttac 366  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42743505 atgattgtgacaatgctaaagcaattcacgcatcttac 42743468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 18147757 - 18147723
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaa 117  Q
    |||||||||||| ||||||||||||||||||||||    
T  18147757 atatattatgcattgtccttatcaactgagctaaa 18147723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 26998089 - 26998052
Alignment:
Q  84 tatattatgcaatgtccttatcaactgagctaaattca 121  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  26998089 tatattatgcattgtccttatcaactgaactaaattca 26998052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 33413348 - 33413390
Alignment:
Q  79 ttgaatatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  33413348 ttgaatatattatgcattgtccttatcaactgagctaaattca 33413390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 7272559 - 7272521
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  7272559 atataatatgcaatatccttatcaactgagctaaattca 7272521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 9259508 - 9259550
Alignment:
Q  80 tgaatatattatgcaatgtccttatcaactgagctaaattcag 122  Q
    |||||| |||||||| |||||||||||||||||||||| ||||    
T  9259508 tgaataaattatgcattgtccttatcaactgagctaaactcag 9259550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 12439703 - 12439665
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  12439703 atatattatgcattgtccttatcaactgagctaagttca 12439665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 18915065 - 18915115
Alignment:
Q  80 tgaatatattatgcaatgtccttatcaactgagctaaattca-ggggacat 129  Q
    ||||||||||||||| |||||||| ||||||||||||| ||| ||||||||    
T  18915065 tgaatatattatgcattgtccttaccaactgagctaaactcacggggacat 18915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 29808290 - 29808328
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  29808290 atatattatgcattgtccttatcaactgatctaaattca 29808328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 42756128 - 42756166
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  42756128 atatattatgcattgtccttatcaactgagctaagttca 42756166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 116
Target Start/End: Complemental strand, 32293146 - 32293117
Alignment:
Q  87 attatgcaatgtccttatcaactgagctaa 116  Q
    ||||||||||||||||||||||||||||||    
T  32293146 attatgcaatgtccttatcaactgagctaa 32293117  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 36203275 - 36203242
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  36203275 atatattatgcattgtccttatcaactgagctaa 36203242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 51760315 - 51760270
Alignment:
Q  82 aatatattatgcaatgtccttatcaactgagctaaattcaggggac 127  Q
    ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  51760315 aatatattatgcactgtccttaccaactgagctaagttcacgggac 51760270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 46434782 - 46434814
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagcta 115  Q
    |||||||||||| ||||||||||||||||||||    
T  46434782 atatattatgcattgtccttatcaactgagcta 46434814  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 42336106 - 42336071
Alignment:
Q  86 tattatgcaatgtccttatcaactgagctaaattca 121  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42336106 tattatgcattgtccttatcaactgagctaaattca 42336071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 8227388 - 8227354
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaa 117  Q
    |||||||||||| ||||||||||||||||||||||    
T  8227388 atatattatgcattgtccttatcaactgagctaaa 8227354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 39926560 - 39926593
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  39926560 atatattatgcattgtccttatcaactgagctaa 39926593  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 45096065 - 45096018
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca-ggggacat 129  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  45096065 atatattatgcattgtccttatcaactgagctaagttcatggggacat 45096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 4216421 - 4216459
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  4216421 atatattatgcattgtccttatcaactgagctaagttca 4216459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 9274712 - 9274750
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  9274712 atatattatgcaatgtctttatcaactgagctaagttca 9274750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 48291971 - 48292005
Alignment:
Q  85 atattatgcaatgtccttatcaactgagctaaatt 119  Q
    |||||||||||||||||||||||| ||||||||||    
T  48291971 atattatgcaatgtccttatcaaccgagctaaatt 48292005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 46469320 - 46469283
Alignment:
Q  79 ttgaatatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  46469320 ttgaatatattatgcattgtccttaccaactgagctaa 46469283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 42208491 - 42208529
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  42208491 atatattatgcattgtccttaccaactgagctaaattca 42208529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 14181370 - 14181403
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    ||||||||||||||||||||||||||||| ||||    
T  14181370 atatattatgcaatgtccttatcaactgatctaa 14181403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 8138480 - 8138518
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  8138480 atatattatgcattgttcttatcaactgagctaaattca 8138518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 10999189 - 10999155
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaa 117  Q
    |||||||||||||||||||||||||||||| ||||    
T  10999189 atatattatgcaatgtccttatcaactgagttaaa 10999155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 18256922 - 18256889
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  18256922 atatattatgcattgtccttatcaactgagctaa 18256889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 20568313 - 20568346
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  20568313 atatattatgcaatgtccttaccaactgagctaa 20568346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 33824920 - 33824887
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  33824920 atatattatgcattgtccttatcaactgagctaa 33824887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 5008878 - 5008842
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaatt 119  Q
    |||||||||||| |||||||| |||||||||||||||    
T  5008878 atatattatgcattgtccttaccaactgagctaaatt 5008842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 39761477 - 39761443
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaa 117  Q
    |||||||||||| ||||||||||||||||||||||    
T  39761477 atatattatgcattgtccttatcaactgagctaaa 39761443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 5980283 - 5980234
Alignment:
Q  66 cgaactttggaatttgaatatattatgcaatgtccttatcaactgagcta 115  Q
    |||||||| ||  ||| |||||||||||| ||||||||||||||||||||    
T  5980283 cgaactttagaccttgcatatattatgcattgtccttatcaactgagcta 5980234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 9459063 - 9459112
Alignment:
Q  67 gaactttggaatttgaatatattatgcaatgtccttatcaactgagctaa 116  Q
    ||||||| || |||| |||||||||||| |||| ||||||||||||||||    
T  9459063 gaactttagattttgtatatattatgcattgtctttatcaactgagctaa 9459112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 10332297 - 10332330
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  10332297 atatattatgcattgtccttatcaactgagctaa 10332330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 28163963 - 28163930
Alignment:
Q  86 tattatgcaatgtccttatcaactgagctaaatt 119  Q
    ||||||||| ||||||||||||||||||||||||    
T  28163963 tattatgcattgtccttatcaactgagctaaatt 28163930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 39068730 - 39068763
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  39068730 atatattatgcattgtccttatcaactgagctaa 39068763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 28771621 - 28771577
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattcaggggac 127  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||    
T  28771621 atatattatgcattgtccttaccaactgagctaaactcacgggac 28771577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 2817395 - 2817433
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaattca 121  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  2817395 atatattatgcattgtccttaccaactgagctaaattca 2817433  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 17396751 - 17396714
Alignment:
Q  79 ttgaatatattatgcaatgtccttatcaactgagctaa 116  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  17396751 ttgaatatattatgcattgtccttgtcaactgagctaa 17396714  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 6645206 - 6645258
Alignment:
Q  77 atttgaatatattatgcaatgtccttatcaactgagctaaattcaggggacat 129  Q
    ||||| |||| ||||||| |||||||| |||||||||||| |||| |||||||    
T  6645206 atttgcatattttatgcattgtccttaccaactgagctaagttcacgggacat 6645258  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 34253735 - 34253771
Alignment:
Q  83 atatattatgcaatgtccttatcaactgagctaaatt 119  Q
    |||||||||||| |||||||| |||||||||||||||    
T  34253735 atatattatgcattgtccttaccaactgagctaaatt 34253771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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