View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_34 (Length: 368)
Name: NF3103_high_34
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 3313832 - 3313633
Alignment:
| Q |
18 |
aataaaagtaataaaccatacataagaaacaacttctcaacaacataacttctataaattaaaacacttactacttgtgtctgaaatgaagccaacctaa |
117 |
Q |
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| T |
3313832 |
aataaaagtaataaaccatacataagaaacaacttctcaacaacataacttctataaattaaaacacttact---tgtgtctgaaatgaagccaacttaa |
3313736 |
T |
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| Q |
118 |
catagataagtttttaagaaagttaagtagcttggtacagtaggtttaatttgagnnnnnnnagggaaggtttaatttgagttgttatgtataacaatga |
217 |
Q |
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| T |
3313735 |
catagataagtttttaagaaagttaagtagcttggtacagtaggtttaatttgagtttttttagggaaggtttaatttgagttgttatgtataacaatga |
3313636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 189 - 355
Target Start/End: Complemental strand, 3311968 - 3311804
Alignment:
| Q |
189 |
ttaatttgagttgttatgtataacaatgatatctttaaaaaacaaaatgtataacaatgatataaagttttataaataacaatacattgttaaattacct |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3311968 |
ttaatttgagttgttatgtataacaatgatatctttaaaaaacaaaatgtataagaatgatataaaattttataaataacaatacattgttaaattacct |
3311869 |
T |
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| Q |
289 |
cttgggaaagaaannnnnnnngttagattaaacctattatactaaataatgttaaaaatccactttc |
355 |
Q |
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| T |
3311868 |
cttgggaaagaaa-aaaaattgttagatt-aacctattatactaaataatgttaaaaatccactttc |
3311804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 3313649 - 3313531
Alignment:
| Q |
235 |
atgtataacaatgatataaagttttataaataacaatacattgttaaattacctcttgggaaagaaannnnnnnngttagattaaacctattatactaaa |
334 |
Q |
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| T |
3313649 |
atgtataacaatgatataaaattttataa-taacaatacattgttaaattacctcttgggaaagaaaaaaaaattgttagatt-aacctattatactaaa |
3313552 |
T |
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| Q |
335 |
taatgttaaaaatccactttc |
355 |
Q |
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| T |
3313551 |
taatgttaaaaatccactttc |
3313531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 34491748 - 34491705
Alignment:
| Q |
21 |
aaaagtaataaaccatacataagaaacaacttctcaacaacata |
64 |
Q |
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| T |
34491748 |
aaaagtaacaaacaatacataagaaacaacttctcaacaacata |
34491705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 9595270 - 9595222
Alignment:
| Q |
33 |
ccatacataagaaacaacttctcaacaacataac-ttctataaattaaa |
80 |
Q |
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|||||||||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
9595270 |
ccatacataagaaacaacttctcagcaacatagctttctataaattaaa |
9595222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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