View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103_high_38 (Length: 340)
Name: NF3103_high_38
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 124 - 322
Target Start/End: Original strand, 7241785 - 7241989
Alignment:
| Q |
124 |
tcatcgctaaagtatagtattaaaaagtcagaa------catttttcctaagtggaaaattgcaattcaggttgcatcaagtcggcaaccttcatgattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7241785 |
tcatcgctaaagtatagtattaaaaagtcagaattaaaacatttttcctaagttgaaaattgcaattcaggttgcatcaagtcggcaaccttcatgattt |
7241884 |
T |
|
| Q |
218 |
attagacttctaaaataaaaaggttgactaaccatagtctggttggtagatttatgtcacaaaggtcatgtcattttcataatttcatttgtgagagtgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7241885 |
attagacttctaaaataaaaaggttgactaaccatagtctggttggtaaatttatgtcacaaaggtcatgtcattttcataatttcatttgtgagagtgg |
7241984 |
T |
|
| Q |
318 |
tccat |
322 |
Q |
| |
|
||||| |
|
|
| T |
7241985 |
tccat |
7241989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7241655 - 7241707
Alignment:
| Q |
1 |
cccaaaatagataatattttagaaacgatatgcttagacttgaggttagatat |
53 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
|
|
| T |
7241655 |
cccaaaatagataatactttagaaacgatatgcttagacttgtgattagatat |
7241707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University