View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_5 (Length: 636)
Name: NF3103_high_5
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 554
Target Start/End: Complemental strand, 54218310 - 54217772
Alignment:
| Q |
16 |
cacttaggaggtcatggttatcatagtggtcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcagagccatcatc |
115 |
Q |
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| T |
54218310 |
cacttaggaggtcatggttatcatagtgatcattacgatccacactggtcactatagtagctgtgttatgctcctgcaattcggtttcagagccatcatc |
54218211 |
T |
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| Q |
116 |
atgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaattttcgagtttccttcgagcgtccttttgatggtttcttatgcattgcattttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218210 |
atgtaacggcgaatgcacaggtgaccccgcttctcctcctcctaatgttcgagtttccttcgagcgtccttttgatggtttcttatgcattgcattttta |
54218111 |
T |
|
| Q |
216 |
cgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcacatctgatatttttaaatcataacaataagattaatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
54218110 |
cgccagttttgcaatgcctttgatgtttgctcgtcaaatattgaccgcttcatcgttgatcccatctgatatttttaaatcataacaacaagattaatat |
54218011 |
T |
|
| Q |
316 |
tctccttcatcaattcatttcattttttaatacaaagtttctatactttgcttgcttaacaagtattataagggtacttgttaacatgaccttaaaaatg |
415 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54218010 |
tctccttcatcaattcatttcatttttcaatacaaagtttctatactttgcttgcttaacaagtatcataagggtacttgttaacatgaccttaaaaatg |
54217911 |
T |
|
| Q |
416 |
aaatgtacctgtgtgacgagtgcatagagaggaagtgtgatatagctgcaaacaaattgagcacccaccctgcataattcaacttcaacttagattatag |
515 |
Q |
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| T |
54217910 |
aaatgtacctgtgtgacgagtgcatagagaggaagtgtgatatagctgcaaacaaattgagcacccaccctgcataattcaacttcaacttagattatag |
54217811 |
T |
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| Q |
516 |
ttgttataactgaattaatttaattcaatttgtttcttg |
554 |
Q |
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| T |
54217810 |
ttgttataactgaattaatttaattcaatttgtttcttg |
54217772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 574 - 629
Target Start/End: Complemental strand, 54217747 - 54217692
Alignment:
| Q |
574 |
ggctaataggtagatctcatctcctatgtaaccctttttcttcttctttcttatct |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54217747 |
ggctaataggtagatctcatctcctatgtaaccctttttcttcttctttcttatct |
54217692 |
T |
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