View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_high_53 (Length: 243)

Name: NF3103_high_53
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_high_53
NF3103_high_53
[»] chr2 (7 HSPs)
chr2 (17-243)||(12234073-12234299)
chr2 (24-234)||(11998504-11998714)
chr2 (17-243)||(7541180-7541406)
chr2 (24-237)||(14702369-14702582)
chr2 (17-237)||(12246394-12246614)
chr2 (17-237)||(12259561-12259784)
chr2 (170-213)||(16663133-16663176)
[»] chr1 (2 HSPs)
chr1 (24-237)||(52549924-52550137)
chr1 (171-199)||(4679690-4679718)
[»] chr7 (3 HSPs)
chr7 (43-213)||(17274580-17274750)
chr7 (138-211)||(8586812-8586885)
chr7 (158-213)||(6788502-6788557)
[»] chr8 (1 HSPs)
chr8 (157-212)||(43441270-43441325)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 12234299 - 12234073
Alignment:
Q  17 agcagtaaatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagatt 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234299 agcagtgaatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagatt 12234200  T
Q  117 gaatctgtgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12234199 gaatctgtgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagca 12234100  T
Q  217 tggaacacattatagctaagattattt 243  Q
    |||||||||||||||||||||||||||    
T  12234099 tggaacacattatagctaagattattt 12234073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 11998714 - 11998504
Alignment:
Q  24 aatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagattgaatctg 123  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||   | |||||||| ||||||||||||||||||||||||| |||| ||||| | ||    
T  11998714 aatgcattggatgactacatttacaaaatgagaaatgctttaaagtcaaaggatattattataaagctctcctcagaagaaatttagaaaattgagtatg 11998615  T
Q  124 tgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagcatggaaca 223  Q
      || ||||||||||||||| ||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  11998614 caatcgcaactgccacaaatctggttgatgagaataagtggcaagttgaaatagatgttctcgaggatcatctgaaagggcttgagagtaggatggaaca 11998515  T
Q  224 cattatagcta 234  Q
     ||||||||||    
T  11998514 aattatagcta 11998504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 7541406 - 7541180
Alignment:
Q  17 agcagtaaatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagatt 116  Q
    |||||| |||| |||||||  |||||||||||||||| ||| |||||| ||||| |  ||||||||| | || |||||||||||||||||||||||||||    
T  7541406 agcagtgaatgtattggatgactacatttacaaaatgggaactgctttaaagaaaaatgatattaatttgaaactctcctcagaagaaattgagaagatt 7541307  T
Q  117 gaatctgtgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagca 216  Q
    ||||||   ||||| |  ||||| |||||| |||||||||||||||| |||||||||||||||||||| ||||||||| |  | |||||| ||||| | |    
T  7541306 gaatctacaattgctaaggccacgaatttgattgatgagaataaccaacaagttgaaatagatgttctggaggatcatgtagaggggcttaagagttgga 7541207  T
Q  217 tggaacacattatagctaagattattt 243  Q
    ||||| ||||||||||||||| |||||    
T  7541206 tggaatacattatagctaagactattt 7541180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 14702582 - 14702369
Alignment:
Q  24 aatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagattgaatctg 123  Q
    |||| |||||||  || |||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||   |||||| |||||||||||| ||    
T  14702582 aatgaattggattacttcatttacaaaatgagaaacgctttgaagaaaaaggatattaatataaagctcacctcattggaaattaagaagattgaat-tg 14702484  T
Q  124 tga-ttgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagcatggaac 222  Q
    | | ||||    |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||  ||||| | | |||||||||||    
T  14702483 tcaattgctgtggccacaaatttgattgatgagaataaccagcaggttgaaatagatgttctggaggatcatttgaagaggcttaataatagcatggaac 14702384  T
Q  223 acattatagctaaga 237  Q
    |||||||||||||||    
T  14702383 acattatagctaaga 14702369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 12246394 - 12246614
Alignment:
Q  17 agcagtaaatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagatt 116  Q
    |||||| ||||| ||||||  |||||||||||||||| |||||||||| ||||| | ||||||| || | |||||||| ||| ||||||| ||||||||     
T  12246394 agcagtgaatgctttggatgactacatttacaaaatgggaaatgctttaaagaaaaaggatattgatgtgaagctctcttcacaagaaatcgagaagatc 12246493  T
Q  117 gaatctgtgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagca 216  Q
    |||||||  |||||    |||||||||||| |||||||||| |||||||| ||||||||||||||| | |||||| |||| || ||| |||||||||| |    
T  12246494 gaatctgcaattgctgtggccacaaatttgcttgatgagaaaaaccagcaggttgaaatagatgttttggaggattatctaaaggggattgagagtagaa 12246593  T
Q  217 tggaacacattatagctaaga 237  Q
    ||||||| |||||||| ||||    
T  12246594 tggaacagattatagccaaga 12246614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 12259561 - 12259784
Alignment:
Q  17 agcagtaaatgcattggatctctacatttacaaaatgagaaatgctttgaagaa---gacggatattaatataaagctctcctcagaagaaattgagaag 113  Q
    |||||| ||||||||||||   |||||||||||||||||||||||||| |||||   |  |||||||||  ||||||||||| |||||||||||||||||    
T  12259561 agcagtgaatgcattggatgattacatttacaaaatgagaaatgctttaaagaatgaggaggatattaacgtaaagctctccacagaagaaattgagaag 12259660  T
Q  114 attgaatctgtgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagta 213  Q
    ||||||||||  ||||||   |||||||||||| ||  |||||||||||||||  | |||   || |||||||||||| |||| || |||||||||||||    
T  12259661 attgaatctgcaattgcagtggccacaaatttgcttagtgagaataaccagcagctcgaagctgaggttcttgaggattatctaaaggggcttgagagta 12259760  T
Q  214 gcatggaacacattatagctaaga 237  Q
    | |||||||| |||||||| ||||    
T  12259761 ggatggaacaaattatagccaaga 12259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 16663133 - 16663176
Alignment:
Q  170 tgaaatagatgttcttgaggatcatctgaaagggcttgagagta 213  Q
    |||| ||||||||||||||||||||||||| | |||||||||||    
T  16663133 tgaagtagatgttcttgaggatcatctgaaggagcttgagagta 16663176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 52549924 - 52550137
Alignment:
Q  24 aatgcattggatctctacatttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagattgaatctg 123  Q
    ||||||||||||  ||||||||||||||| ||||||||||| |||||   |||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  52549924 aatgcattggatgactacatttacaaaatcagaaatgctttaaagaaagaggatattaatttgaagctctcctcagaagaaattgagaagatcgaatctg 52550023  T
Q  124 tgattgcaactgccacaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagtagcatggaaca 223  Q
      ||||||   ||||| |||||||||||| |||| |||||||||||||||||||||||||| || |||||| | || |  ||| ||||| | ||| ||||    
T  52550024 caattgcagtggccacgaatttggttgatcagaaaaaccagcaagttgaaatagatgttctggaagatcatgtaaaggaacttcagagttggatgaaaca 52550123  T
Q  224 cattatagctaaga 237  Q
     |||||||||||||    
T  52550124 gattatagctaaga 52550137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 4679690 - 4679718
Alignment:
Q  171 gaaatagatgttcttgaggatcatctgaa 199  Q
    |||||||||||||||||||||||||||||    
T  4679690 gaaatagatgttcttgaggatcatctgaa 4679718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 213
Target Start/End: Complemental strand, 17274750 - 17274580
Alignment:
Q  43 tttacaaaatgagaaatgctttgaagaagacggatattaatataaagctctcctcagaagaaattgagaagattgaatctgtgattgcaactgccacaaa 142  Q
    |||||||||||| ||||   |||||| ||| ||| |||||| |||||||||| ||||||||||   | |||||  |  |||  |||||||  ||||||||    
T  17274750 tttacaaaatgaaaaatctgttgaaggagaaggacattaatttaaagctctcttcagaagaaagcaataagatcaacactgcaattgcaatcgccacaaa 17274651  T
Q  143 tttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagta 213  Q
    |||| ||||||||||  ||||||||  |||||| ||| ||||||||| |||  |||| | |||||||||||    
T  17274650 tttgcttgatgagaacgaccagcaaaatgaaattgattttcttgaggctcaattgaatgagcttgagagta 17274580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 8586812 - 8586885
Alignment:
Q  138 acaaatttggttgatgagaataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagag 211  Q
    ||||||||| ||||| ||||||||||| |   ||| ||||||||||||| |||||||||||| | |||||||||    
T  8586812 acaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggagcttgagag 8586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 6788557 - 6788502
Alignment:
Q  158 taaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagta 213  Q
    |||||| || |||||||| ||||||||||| | ||||||||||| |||||||||||    
T  6788557 taaccaacaggttgaaattgatgttcttgaaggtcatctgaaagagcttgagagta 6788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 43441325 - 43441270
Alignment:
Q  157 ataaccagcaagttgaaatagatgttcttgaggatcatctgaaagggcttgagagt 212  Q
    |||||||||||  ||||||||||||||||||  |||||||||| | ||||||||||    
T  43441325 ataaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagt 43441270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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