View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_56 (Length: 239)
Name: NF3103_high_56
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7023619 - 7023842
Alignment:
| Q |
1 |
tcccttgcttatggttcaatctgacactattagataaaattaaattagcaataaaaatttaaagagagataatatgaaatatgaatctattttttcacta |
100 |
Q |
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| T |
7023619 |
tcccttgcttatggttcaatctgacact--tagataaaattaaattagcaataaaaatttaaagagagataatatgaaatatgaatctattttttcacta |
7023716 |
T |
|
| Q |
101 |
aatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataa----nnnnnnnnctgttaataaaaatctacattataatct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7023717 |
aatttaattaggaaaattaaacgagaatttatagttttgtatatctaatttggtctataaatttttttttttctgttaataaaaatctacattataatct |
7023816 |
T |
|
| Q |
197 |
agactatagttttatatcatttatgt |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7023817 |
agactatagttttatatcatttatgt |
7023842 |
T |
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