View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_high_60 (Length: 236)
Name: NF3103_high_60
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_high_60 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36288183 - 36288403
Alignment:
| Q |
1 |
atttcattctttaatatttaagcaagtgcttgatcagccacttgaggctgtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaa |
100 |
Q |
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| T |
36288183 |
atttcattctttaatatttaagcaagtgcttgatcagccacttgaggctgtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaa |
36288282 |
T |
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| Q |
101 |
tccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaacaccaatacattagtattcaa |
200 |
Q |
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| T |
36288283 |
tccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaacactaatacattagtattcaa |
36288382 |
T |
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| Q |
201 |
ttatcaatttcgatatagaat |
221 |
Q |
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||||||||||| ||||||||| |
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| T |
36288383 |
ttatcaatttcaatatagaat |
36288403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 36282888 - 36283042
Alignment:
| Q |
50 |
gtttactgattgcttttaccatttgtaaacatttcaaaggcaatcatcgaatccaagggatcggtgctggtatcattcctcctgttctggaagttgatct |
149 |
Q |
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| T |
36282888 |
gtttactgattgatttttctatttgaacacatttcaaaggcaaacacctaatccaagggatcggtgctggtatcgttccccctatcctggaagttgatct |
36282987 |
T |
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| Q |
150 |
cctagatgaagttattcaggtagctcgcaacaccaatacattagtattcaattat |
204 |
Q |
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| T |
36282988 |
cctagatgaagttattcaggttgctctcaatactaatacattggcattcaattat |
36283042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 206
Target Start/End: Original strand, 36293702 - 36293828
Alignment:
| Q |
80 |
atttcaaaggcaatcatcgaatccaagggatcggtgctggtatcattcctcctgttctggaagttgatctcctagatgaagttattcaggtagctcgcaa |
179 |
Q |
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||||||||||||| || | | |||||||||||||| |||| || |||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
36293702 |
atttcaaaggcaaacacctagtccaagggatcggtactggcgtcgttccccctgtcctggatcttgatctcctagatgaagttattcaggtagcttgcaa |
36293801 |
T |
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| Q |
180 |
caccaatacattagtattcaattatca |
206 |
Q |
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||| |||||| | |||||||||||||| |
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| T |
36293802 |
cactaatacactggtattcaattatca |
36293828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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