View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103_low_12 (Length: 545)
Name: NF3103_low_12
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_12 |
 | |
|
| [»] scaffold0001 (3 HSPs) |
| | |
|
| [»] scaffold0158 (7 HSPs) |
| | |
|
| [»] scaffold0035 (7 HSPs) |
| | |
|
| [»] scaffold0564 (2 HSPs) |
| | |
|
| [»] scaffold1407 (2 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0001 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 59 - 303
Target Start/End: Original strand, 186206 - 186450
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186206 |
ccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
186305 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186306 |
tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagcttttagacaagcattagaaattcatagccgattgtaatcctaa |
186405 |
T |
|
| Q |
259 |
gtttcagtttccttttcattcacagtttgatacaatcgtactgtt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186406 |
gtttcagtttccttttcattcacagtttgatacaatcgtactgtt |
186450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 349 - 535
Target Start/End: Original strand, 186487 - 186673
Alignment:
| Q |
349 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagct |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186487 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagct |
186586 |
T |
|
| Q |
449 |
tattttcattctctgctgctgctgccgtgttatttatttctctgctagagatatttcattcctgctgtcgtaatggattgatgatgt |
535 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
186587 |
tattttcattctctgttgctgctgccgtgttatttatttctctgctagagatatttcattcctgctgtcgtaatggattgctgatgt |
186673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 186148 - 186187
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcagac |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
186148 |
accagcaccccagaccgtcaccaccccgtgacgagcagac |
186187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 193; Significance: 1e-104; HSPs: 7)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 36603 - 36359
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
36603 |
ccgtcatgggttcgggagaatcagtctgccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcataatacgt |
36504 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaa |
258 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
|
|
| T |
36503 |
tgtaaaagaagcttggcctataaataggtccagagaggaagagctgcggagagaagtttttaggcaagcattagaaattcataactgattgtaatcctaa |
36404 |
T |
|
| Q |
259 |
gtttcagtttccttttcattcacagtttgatacaatcgtactgtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36403 |
gtttcagtttccttttcattcacagtacgatacaatcgtactgtt |
36359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 59 - 174
Target Start/End: Complemental strand, 31135 - 31020
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
31135 |
ccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctccacctgcagaggcacgatcagaacacat |
31036 |
T |
|
| Q |
159 |
tgttaaagaagcttgg |
174 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31035 |
tgttaaagaagcttgg |
31020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 28769 - 28637
Alignment:
| Q |
170 |
cttggcctataaataggtccagagaggaagagctgaggagagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttcagtttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
28769 |
cttggcctataaataggtccagagaggaagagctgcggagagaagtttttaggcaagctttagaaatgcataactgattgtaatcctaagtttcagtttc |
28670 |
T |
|
| Q |
270 |
cttttcattcacagtttgatacaatcgtactgtt |
303 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28669 |
cttttcatttacagttt-atacaatcgtactgtt |
28637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 36313 - 36218
Alignment:
| Q |
349 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaatt |
444 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36313 |
ccaaattcagtcattgttgttctaattccaaaataagctgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaatt |
36218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 444
Target Start/End: Complemental strand, 28591 - 28496
Alignment:
| Q |
349 |
ccaaattcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaatt |
444 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28591 |
ccaaattcagtcattgttgttctaattccaaaataagttgctgccgtgttatttatttccttgttgctgcggtttggaattggtgttcgttaaatt |
28496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 31193 - 31148
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcagaccgtcac |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31193 |
accagcaccccagaccgtcaccaccccgtgacgagcagaccgtcac |
31148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 36661 - 36628
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacga |
53 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
36661 |
accagcaccgcagaccgtcaccaccccgtgacga |
36628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 136; Significance: 1e-70; HSPs: 7)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 59 - 300
Target Start/End: Complemental strand, 97765 - 97520
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
97765 |
ccgtcacgggttcgggagaatcagtcttccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgt |
97666 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaataggtccagagaggaagagctga--ggagagaagtttttagacaagcattagaaattcatagccgattgtaatcct |
256 |
Q |
| |
|
| |||| |||||||||||||||||||||| ||| | | | || | || ||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
97665 |
ttttaagaaagcttggcctataaataggtctagaaaaggaaaggaaaagggggagaagtttttaggcaagcattagaaattcatagctgattgtaatcct |
97566 |
T |
|
| Q |
257 |
aagtttca--gtttccttttcattcacagtttgatacaatcgtact |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
97565 |
aagtttcaagttttccttttcattcacagtttgatacaatcgtact |
97520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 356 - 514
Target Start/End: Complemental strand, 97473 - 97315
Alignment:
| Q |
356 |
cagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
455 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97473 |
cagtcatcgttgttctaattccgaattaagctgctgtcgtgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
97374 |
T |
|
| Q |
456 |
attctctgctgctgctgccgtgttatttatttctctgctagagatatttcattcctgct |
514 |
Q |
| |
|
|||||||| || ||||| |||||||||| ||| ||||||| ||||||||||| ||||| |
|
|
| T |
97373 |
attctctgttgttgctgtcgtgttatttcattccctgctagcgatatttcatttctgct |
97315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 356 - 521
Target Start/End: Complemental strand, 87780 - 87614
Alignment:
| Q |
356 |
cagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
455 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87780 |
cagtcatcgctgttctaattccgaattaagctgctgccgtgttatttatttctctgttgctgcggtttggaatgggtgttcgttaaattagcttattttc |
87681 |
T |
|
| Q |
456 |
attctctgctgctgctgccg-tgttatttatttctctgctagagatatttcattcctgctgtcgtaa |
521 |
Q |
| |
|
|||||||| || || || || |||||||| ||| ||||||| |||||||||| |||||| ||||| |
|
|
| T |
87680 |
attctctgttgttgttgtcgttgttatttcattccctgctagcaatatttcatttctgctggcgtaa |
87614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 87920 - 87827
Alignment:
| Q |
209 |
gagaagtttttagacaagcattagaaattcatagccgattgtaatcctaagtttca--gtttccttttcattcacagtttgatacaatcgtact |
300 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
87920 |
gagaagtttttaggcaaacattagaaattcatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtact |
87827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 59 - 156
Target Start/End: Complemental strand, 88047 - 87950
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacac |
156 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| |||||| |||||||| |
|
|
| T |
88047 |
ccgtcacgggttcgggagaatcagtcttgcccactcccaggaacggttttcagttttctctcccacttcctccacctgcagaagcacgaccagaacac |
87950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 97823 - 97778
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcagaccgtcac |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97823 |
accagcaccccagaccgtcaccaccccgtgacgagcagaccgtcac |
97778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 88105 - 88069
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagca |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
88105 |
accagcaccccagaccgtcaccaccccgtgacaagca |
88069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 6e-60; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 59 - 279
Target Start/End: Complemental strand, 18477921 - 18477697
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
18477921 |
ccgtcatgggttcgggagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcacgaccagaacacgt |
18477822 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaataggtccagag-aggaagagctgaggagagaag--tttttagacaagcattagaaattcatagccgattgtaatcc |
255 |
Q |
| |
|
| || | |||||||||||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
18477821 |
tttttacgaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcttattgtaatcc |
18477722 |
T |
|
| Q |
256 |
taagtttc-agtttccttttcattc |
279 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
18477721 |
taagtttcaagtttccttttcattc |
18477697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 60 - 279
Target Start/End: Complemental strand, 18488016 - 18487793
Alignment:
| Q |
60 |
cgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgtt |
159 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||| || |||||||| || |
|
|
| T |
18488016 |
cgtcacgggttcggaagaatcagtctcccccactcccaggaacggtttccagttttctctcccacttcctccacctgcagaagcatgaccagaacacatt |
18487917 |
T |
|
| Q |
160 |
gttaaagaagcttggcctataaataggtccagag-aggaagagctgaggagagaag--tttttagacaagcattagaaattcatagccgattgtaatcct |
256 |
Q |
| |
|
|| | |||||||||||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
18487916 |
ttttaggaagcttggcctataaataggtgcagagaagaaaggaaaaaggagagaagtttttttaggcaagcattagaaattcatagcatattgtaatcct |
18487817 |
T |
|
| Q |
257 |
aagtttc-agtttccttttcattc |
279 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
18487816 |
aagtttcaagtttccttttcattc |
18487793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 355 - 470
Target Start/End: Complemental strand, 18487727 - 18487611
Alignment:
| Q |
355 |
tcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcgg-tttggaatgggtgttcgttaaattagcttattt |
453 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| ||| | || ||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |
|
|
| T |
18487727 |
tcagtcattgctgttcttattccaaattaagctgcggctgtattgtttatttctctgttgctgcggttttggaatgggtgttcgttaaactaccttattt |
18487628 |
T |
|
| Q |
454 |
tcattctctgctgctgc |
470 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
18487627 |
tcattctttgttgctgc |
18487611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 470
Target Start/End: Complemental strand, 18477631 - 18477515
Alignment:
| Q |
355 |
tcagtcatcgctgttctaattccgaaataagctgctgctatgttatttatttctctgttgctgcgg-tttggaatgggtgttcgttaaattagcttattt |
453 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| || | || ||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
18477631 |
tcagtcattgctgttcttattccgaattaagctgcgactgtattgtttatttctctgttgctgcggttttggaatgggtgttcgttaaactacgttattt |
18477532 |
T |
|
| Q |
454 |
tcattctctgctgctgc |
470 |
Q |
| |
|
||||||| || |||||| |
|
|
| T |
18477531 |
tcattctttgttgctgc |
18477515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 18477979 - 18477934
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcagaccgtcac |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18477979 |
accagcaccccagaccgtcaccaccccgtgtcgagcagaccgtcac |
18477934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 18488075 - 18488036
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcagac |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18488075 |
accagcaccccagaccgtcaccaccccgtgtcgagcagac |
18488036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 14223520 - 14223646
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
14223520 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt |
14223619 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaatag |
185 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
14223620 |
ttccaatgaagcttggcctataaatag |
14223646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 14233615 - 14233741
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
14233615 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt |
14233714 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaatag |
185 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
14233715 |
ttccaatgaagcttggcctataaatag |
14233741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 14223464 - 14223500
Alignment:
| Q |
22 |
cagcaccccagaccgtcaccaccccgtgacgagcaga |
58 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14223464 |
cagcatcccagaccgtcaccaccccgtgacgagcaga |
14223500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 14233559 - 14233595
Alignment:
| Q |
22 |
cagcaccccagaccgtcaccaccccgtgacgagcaga |
58 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14233559 |
cagcatcccagaccgtcaccaccccgtgacgagcaga |
14233595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 28386076 - 28386202
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | |||||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
28386076 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccagatttctctcccactcgctccacctgcagaagcacgatcagagcacgt |
28386175 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaatag |
185 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
28386176 |
ttccaatgaagcttggcctataaatag |
28386202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 28386018 - 28386056
Alignment:
| Q |
20 |
accagcaccccagaccgtcaccaccccgtgacgagcaga |
58 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28386018 |
accagcatcccagaccgtcaccaccccgtgacgagcaga |
28386056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 661 - 535
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaacacgt |
158 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | ||||||||||| |||||||||||||| || |||||||||| ||||||||||| ||||| |
|
|
| T |
661 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttccatatttctctcccactcgctccacctgcagaagcacgatcagagcacgt |
562 |
T |
|
| Q |
159 |
tgttaaagaagcttggcctataaatag |
185 |
Q |
| |
|
| || |||||||||||||||||||| |
|
|
| T |
561 |
ttccaatgaagcttggcctataaatag |
535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 717 - 681
Alignment:
| Q |
22 |
cagcaccccagaccgtcaccaccccgtgacgagcaga |
58 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
717 |
cagcatcccagaccgtcaccaccccgtgacgagcaga |
681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 1502 - 1408
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaa |
153 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | ||||||| ||||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
1502 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaacggttcccagttttctctcccactcgctccacctgcagaagcacgatcagaa |
1408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 58
Target Start/End: Complemental strand, 1552 - 1522
Alignment:
| Q |
28 |
cccagaccgtcaccaccccgtgacgagcaga |
58 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1552 |
cccagaccgtcaccaccccgtgacgagcaga |
1522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 32343 - 32437
Alignment:
| Q |
59 |
ccgtcacgagttcgggagaatcagtctcccccacttccaggaacggtttccagttttctctcccactccctgcacctgcagaggcacgatcagaa |
153 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||| | | | ||| |||||| |||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
32343 |
ccgtcacgggttcggaagaagcagtctcccccattatctgaaactgtttccggttttctctcccactcgctccacctgcagaagcacgatcagaa |
32437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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