View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_17 (Length: 456)
Name: NF3103_low_17
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 5 - 443
Target Start/End: Complemental strand, 53478478 - 53478040
Alignment:
| Q |
5 |
gcggacgttggaaacaagcacaatttcaaaatcttcatgggggtcttgtttttcagctagctcttgcttgattatctgataaacgttaatcaatttggga |
104 |
Q |
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| T |
53478478 |
gcggtcgttggaaacaagcacaatttcaaaatcttcatgggggtcttgtttttcagctagctcttgcttgattatctgataaacgttaatcaatttggga |
53478379 |
T |
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| Q |
105 |
gtgaatttggtgcatgggacacaccatccagctgagaagtatagtccaatagttttaccaactaaagaagcaactggtacctgtaaaacaaaagattaat |
204 |
Q |
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| T |
53478378 |
gtgaatttggtgcatgggacacaccatccagctgagaagtatagtccaatagttttaccaactaaagaagcaactggtacctgtaaaacaaaagattaat |
53478279 |
T |
|
| Q |
205 |
actaacatttatttctaattaattatggtccagtttgaattatatttttagttaaagtgtttctcaagtaaagttctttcacttacatgatgaagttttg |
304 |
Q |
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| T |
53478278 |
actaacatttatttctaactaattatggtccagtttgaattatatttttagttaaagtgtttctcaagtaaagttctttcacttacatgatgaagttttg |
53478179 |
T |
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| Q |
305 |
ttttgatataagtaaaagtgatatttatttttgtatttatttactatagtttaaaagacgaatagttcgagtgtttgagttgatttgaaaaaatatctag |
404 |
Q |
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| T |
53478178 |
ttttgatataagtaaaagtgatatttatttttgtatttatttactatagtttaaaagacgaatagttcgagtgtttgagttgatttgaaaaaatatctag |
53478079 |
T |
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| Q |
405 |
gatttgagtgttatattttaatttgtatcatggatttga |
443 |
Q |
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| T |
53478078 |
gatttgagtgttatattttaatttgtatcatggatttga |
53478040 |
T |
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