View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103_low_18 (Length: 456)
Name: NF3103_low_18
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Original strand, 3009643 - 3010071
Alignment:
| Q |
20 |
cgatcctaattatgtatgttccttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagtta |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009643 |
cgatcctaattatgtatgttccttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagtta |
3009742 |
T |
|
| Q |
120 |
catacttacagtcatggttgcatctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009743 |
catacttacagtcatggttgcatctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataatta |
3009842 |
T |
|
| Q |
220 |
gnnnnnnnnacctgtctaaactaccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgat |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3009843 |
gttttttttacctgtctaaactaccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgat |
3009942 |
T |
|
| Q |
320 |
gaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatatt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3009943 |
gaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatatt |
3010042 |
T |
|
| Q |
420 |
gatgtgatatgcttccactttcctatgct |
448 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3010043 |
gatgtgatatgcttccactttcctatgct |
3010071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 373
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
276 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
373 |
Q |
| |
|
||||||||||| || |||||||| |||||||| || ||||||||||| || || || || || || || ||||| |||| ||||||||||| ||||| |
|
|
| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University