View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_19 (Length: 453)
Name: NF3103_low_19
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 382
Target Start/End: Complemental strand, 43179907 - 43179528
Alignment:
| Q |
13 |
aacatctgcttattatcactcagtcaaaccttagttagtttgagtttgactttcagcttgagaacactagctatttctttcaaatccattttagaggtta |
112 |
Q |
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| T |
43179907 |
aacatctgcttattatcactcagtcaaaccttagttagtttgagtttgactttcagcttgagaacactagctatttctttcaaaaccattttagaggtta |
43179808 |
T |
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| Q |
113 |
gttgcttaacactgcattgaacaaatcatatcctcaagtatgcatatgatatgacagacctacgcatcctattattaattaaattttgtaataaaaaacc |
212 |
Q |
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| T |
43179807 |
gttgcttaacactgcattgaacaaatcatatcctcaagtatgcatatgatatgacagacctacgcatcctattattaattaaattttgtaataaaaaacc |
43179708 |
T |
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| Q |
213 |
acttatcaattatcatatttgctttgat-nnnnnnnnttatcatattttccgagttataagaacttagatgcaaaaaaccactaaatatttgtttttcct |
311 |
Q |
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| T |
43179707 |
acttatcaattatcatatttgctttgataaaaaaaaattatcatattttccgagttataagaacttaggtgcaaaaaaccactaaatatttgtttttcct |
43179608 |
T |
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| Q |
312 |
ttcca---------nnnnnnnnatgtgaattggatattttacatgcaactgtagatattaatccttcgaaccacgtaaga |
382 |
Q |
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| T |
43179607 |
ttccattattattttttttgttatgtgaattgaatattttacatgcaactgtagatattaatccttcgaaccacgtaaga |
43179528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 438
Target Start/End: Complemental strand, 43179526 - 43179494
Alignment:
| Q |
406 |
cttaatatatttatgttttttgagtttttgacc |
438 |
Q |
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| T |
43179526 |
cttaagatatttatgttttttgagtttttgacc |
43179494 |
T |
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