View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_22 (Length: 435)
Name: NF3103_low_22
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 42260988 - 42260580
Alignment:
| Q |
15 |
gatacacataatttaaacaatgcatatgcaaaacataataatatacatgtaggagttttatttttgctaacctaccaccccacatccttgtatgcaaatg |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42260988 |
gatacacataatttaaacaatgcatatgtaaaacataataatatacatgtaggagttttatttttgctaacctaccaccccacatccatgtatgcaaatg |
42260889 |
T |
|
| Q |
115 |
caagtacgtgaagaaataagggaaccgtggttgaatcactaggttatatatttatattctcctttaaaaattaaactaaattaaaatagtttcatcttat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42260888 |
caagtacgtgaagaaataagggaaccgtggttgaatcactaggttatatatttatattctcctttaaaaattaaactaaactaaaatagtttcatcttat |
42260789 |
T |
|
| Q |
215 |
atgtgactcagagatcattggctctatcgatcgaccagaaaagctaactttaggatctccacgccactacaaacagatgttcctgagccacatagtccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42260788 |
atgtgactcagagatcattggctctatcgatcgaccagaaaagctaactttaggatctccacgccactacaaacagatgttcctgagccacatagtccat |
42260689 |
T |
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| Q |
315 |
ttcactttacaacaaaattaattaattaatgtcgaaagtatcccatgataacaaaatagataataatttaatagtagcaaaaatataaaggttggatagg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42260688 |
ttcactttacaacaaaattaattaattaatgtcgaaagtatcccatgataacaaaatagataataatttaatagtagcaaaaatataaaggttggatagg |
42260589 |
T |
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| Q |
415 |
agaccatat |
423 |
Q |
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||||||||| |
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| T |
42260588 |
agaccatat |
42260580 |
T |
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