View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_24 (Length: 416)
Name: NF3103_low_24
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 191 - 407
Target Start/End: Original strand, 33389412 - 33389628
Alignment:
| Q |
191 |
tggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttcatagtacctttgtgagtaaggtt |
290 |
Q |
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| T |
33389412 |
tggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcctcttctccaatatttcatagtacctttgtgagtaaggtt |
33389511 |
T |
|
| Q |
291 |
ttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttcaccatcttggcagtagagtcgtcatcgacgacgtcaaagagactcac |
390 |
Q |
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| T |
33389512 |
ttctgttccaacggttaatgaagttgttgacggttaaaccaccgtttgttttcaccatcttggcagtagagtcgtcatcgacgacgtcaacgagactcac |
33389611 |
T |
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| Q |
391 |
ctttctcttcctctctg |
407 |
Q |
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||||||||||||||||| |
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| T |
33389612 |
ctttctcttcctctctg |
33389628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 33389274 - 33389416
Alignment:
| Q |
12 |
catcaatctcttcagccacgcggcatgaaacagacagtgcagcaactctacgaggttgagtgcatgcaaccatcatcttgctatgtttatctcgagtctc |
111 |
Q |
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| T |
33389274 |
catccatctcttcagccacgcggcgtgaaacagacagtgcagcaactctacgaggttgagtgcatgcaaccatcatcttcctatgtttatctcgagtctc |
33389373 |
T |
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| Q |
112 |
taaatcaacagcttccaatacaaactgaggaatctgagtggtt |
154 |
Q |
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| T |
33389374 |
taaatcaacagcttccagtacaaactgaggaatctgagtggtt |
33389416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 145 - 407
Target Start/End: Original strand, 38781418 - 38781677
Alignment:
| Q |
145 |
ctgagtggttttaccactaccagtttcaccaacaagaatcaaaatctggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagg |
244 |
Q |
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| T |
38781418 |
ctgagtggtttttccactaccagtttcaccaacaagaatcaaagtctgattatccttcaaaaccttcaagaaatcctctttctgatgccaaacaggaagg |
38781517 |
T |
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| Q |
245 |
gttttcctcttctccaatatttcatagtacctttgtgagtaaggttttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttca |
344 |
Q |
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| T |
38781518 |
gttttcctcttttccaaaatctcatgatacctttgcgagtaaggttttccattccaacggttaatgagattgttaccaattaaaccgccattagttttca |
38781617 |
T |
|
| Q |
345 |
ccatcttggcagtagagtcgtcatcgacgacgtcaaagagactcacctttctcttcctctctg |
407 |
Q |
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| T |
38781618 |
ccatcttagctgcag---cgtcgtcgacgacgtcgaataaactcaccttcctctttctctctg |
38781677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 38780456 - 38780583
Alignment:
| Q |
20 |
tcttcagccacgcggcatgaaacagacagtgcagcaactctacgaggttgagtgcatgcaaccatcatcttgctatgtttatctcgagtctctaaatcaa |
119 |
Q |
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||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||| | | |||||| ||| |||||| |||| |
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| T |
38780456 |
tcttcagccacacggcgtgaaacagacatggcagccactctacgaggctgagtgcatgcaatcatcatcttcttgcgcttatctggagcctctaattcaa |
38780555 |
T |
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| Q |
120 |
cagcttccaatacaaactgaggaatctg |
147 |
Q |
| |
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||||||| || || |||||||| ||||| |
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| T |
38780556 |
cagcttctaaaacgaactgagggatctg |
38780583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 152 - 403
Target Start/End: Complemental strand, 20814377 - 20814138
Alignment:
| Q |
152 |
gttttaccactaccagtttcaccaacaagaatcaaaatctggttatccttcaaaacctgcaaaaaatcttgtttctggtgccaaactggaagggttttcc |
251 |
Q |
| |
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||||| |||||||| ||||||||||| || || |||||||| |||||||| |||| |||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
20814377 |
gttttgccactaccggtttcaccaacgaggattaaaatctgattatccttaaaaaactgcaaaaaatcatctttctggtgccaaaccggaagggttttcc |
20814278 |
T |
|
| Q |
252 |
tcttctccaatatttcatagtacctttgtgagtaaggttttctgttccaacggttaatgaagttgttgacggttaagccaccgtttgttttcaccatctt |
351 |
Q |
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|||||||||| || || |||| ||| | ||||||||||||| |||||| || ||||||| || |||| || ||||| ||||||||| |||| |
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| T |
20814277 |
tcttctccaaaatctcgaagtaacttggagagtaaggttttccgttccagcg---------gttgttgccgattaaaccgccgttggttttcaccgtctt |
20814187 |
T |
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| Q |
352 |
ggcagtagagtcgtcatcgacgacgtcaaagagactcacctttctcttcctc |
403 |
Q |
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|||||||||||| |||||||| || || | ||||||||||||||||||| |
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| T |
20814186 |
agcagtagagtcg---tcgacgacatcgaataaactcacctttctcttcctc |
20814138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 20815375 - 20815240
Alignment:
| Q |
12 |
catcaatctcttcagccacgcggcatgaaacagacagtgcagcaactctacgaggttgagtgcatgcaaccatcatcttgctatgtttatctcgagtctc |
111 |
Q |
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|||| ||||||||||||||||||| |||||||||| |||||| |||||||| || ||||||||||||| ||||||||| | ||||||||| ||||||| |
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| T |
20815375 |
catccatctcttcagccacgcggcgggaaacagacattgcagccactctacgtggctgagtgcatgcaatcatcatcttcttgtgtttatctggagtctc |
20815276 |
T |
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| Q |
112 |
taaatcaacagcttccaatacaaactgaggaatctg |
147 |
Q |
| |
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||||||||||||||| | ||||||||||| ||||| |
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| T |
20815275 |
taaatcaacagcttctagaacaaactgagggatctg |
20815240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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