View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_29 (Length: 392)

Name: NF3103_low_29
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_29
NF3103_low_29
[»] chr1 (3 HSPs)
chr1 (19-392)||(51770725-51771087)
chr1 (59-131)||(11356617-11356688)
chr1 (64-127)||(8049201-8049264)
[»] chr8 (1 HSPs)
chr8 (30-101)||(24214074-24214143)
[»] chr7 (2 HSPs)
chr7 (70-108)||(34649516-34649554)
chr7 (72-108)||(28467596-28467632)
[»] chr3 (2 HSPs)
chr3 (27-101)||(22770815-22770889)
chr3 (77-114)||(4298246-4298283)
[»] chr4 (1 HSPs)
chr4 (19-99)||(49815556-49815634)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 51771087 - 51770725
Alignment:
Q  19 ctactaatatgcttgcatgtgtaaattgagatgggactagaaagagactatgtgtgtaaaataaaattgtatcaagagtatttaagtaatgtcttatata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||    
T  51771087 ctactaatatgcttgcatgtgtaaattgagatgggactagaaagagattatgtgtgtaaaataaaattg-------agtatttaagtaatgtcttatata 51770995  T
Q  119 caaagaaataaaattggtgtatattgtgatatctatatatatatcggtcgttaaagagatccgccactagatccaagcattgatactttagtattctaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51770994 caaagaaataaaattggtgtatattgtgatatctatatat----cggtcgttaaagagatccgccactagatccaagcattgatactttagtattctaat 51770899  T
Q  219 ttaactagtgaattgatttcattgtaaattttaggatggatcactttgataagcagtccatcgaagaatgaaatttaaaaatcgtttgaaacttcaacgg 318  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51770898 ttaactagtgaattgatttcatggtaaattttaggatggatcactttgataagcagttcatcgaagaatgaaatttaaaaatcgtttgaaacttcaacgg 51770799  T
Q  319 tgataagaagttgccttctagtagtaggaattcataatttttctcgtcctcaaggaaggtacattgacttggtc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51770798 tgataagaagttgccttctagtagtaggaattcataatttttctcgtcctcaaggaagatacattgacttggtc 51770725  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 11356688 - 11356617
Alignment:
Q  59 aaagagactatgtgtgtaaaataaaattgtatcaagagtatttaagtaatgtcttatatacaaagaaataaaa 131  Q
    ||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||| ||| ||||    
T  11356688 aaagagactatgtgtgtaagataaaattgtattaagagtattttagtaatgtc-tatatacaaaaaaaaaaaa 11356617  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 8049201 - 8049264
Alignment:
Q  64 gactatgtgtgtaaaataaaattgtatcaagagtatttaagtaatgtcttatatacaaagaaat 127  Q
    |||||| | |||||||||| |||||||||||||||||| | |||| ||||||||| ||| ||||    
T  8049201 gactatatatgtaaaataatattgtatcaagagtattttaataatttcttatataaaaaaaaat 8049264  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 24214143 - 24214074
Alignment:
Q  30 cttgcatgtgtaaattgagatgggactagaaagagactatgtgtgtaaaataaaattgtatcaagagtattt 101  Q
    |||||||||||||||||||  || || |  ||||||||||| |||||||||||||||||||||||| |||||    
T  24214143 cttgcatgtgtaaattgagggggtacca--aagagactatgcgtgtaaaataaaattgtatcaagaatattt 24214074  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 34649516 - 34649554
Alignment:
Q  70 gtgtgtaaaataaaattgtatcaagagtatttaagtaat 108  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  34649516 gtgtgtaaaataaaattgtatcaagagtattttagtaat 34649554  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 28467632 - 28467596
Alignment:
Q  72 gtgtaaaataaaattgtatcaagagtatttaagtaat 108  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  28467632 gtgtaaaataaaattatatcaagagtattttagtaat 28467596  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 22770889 - 22770815
Alignment:
Q  27 atgcttgcatgtgtaaattgagatgggactagaaagagactatgtgtgtaaaataaaattgtatcaagagtattt 101  Q
    |||||||||||| | ||| |||| |  || ||| ||||| |||||||||||||||||||| ||||||||||||||    
T  22770889 atgcttgcatgtttgaatggagaggataccagagagagattatgtgtgtaaaataaaattatatcaagagtattt 22770815  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 4298283 - 4298246
Alignment:
Q  77 aaataaaattgtatcaagagtatttaagtaatgtctta 114  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  4298283 aaataaaattgtatgaagagtattttagtaatgtctta 4298246  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 49815556 - 49815634
Alignment:
Q  19 ctactaatatgcttgcatgtgtaaattgagatgggactagaaagagactatgtgtgtaaaataaaattgtatcaagagtat 99  Q
    ||||||| |||||||||||||| ||| |||  || || | ||||||||||||| |||||||||||||||||||| ||||||    
T  49815556 ctactaaaatgcttgcatgtgtgaatggagg-ggtaccaaaaagagactatgt-tgtaaaataaaattgtatcatgagtat 49815634  T

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