View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_3 (Length: 716)

Name: NF3103_low_3
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_3
NF3103_low_3
[»] chr4 (1 HSPs)
chr4 (41-705)||(47581107-47581770)


Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 41 - 705
Target Start/End: Original strand, 47581107 - 47581770
Alignment:
Q  41 atgcatattcatcttttcaactctttattcatatacctatttctcttttgcaagaattttcatttatcatggagaatttatttaaattatgaccttgtta 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47581107 atgcatattcatcttttcaactctttattcatatacctatttctcttttgcaagaattttcatttatcatggagaatttatttaaattatgaccttgtta 47581206  T
Q  141 tatgtcagatttagtttaacgaatatatacatagatttgatgcataattctgtaatttgatcttgttaaattgttttctctctgctttgttaaaggaaag 240  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47581207 tatgtcagatttagtttaacgaatttatacatagatttgatgcataattctgtaatttgatcttgttaaattgttttctctctgctttgctaaaggaaag 47581306  T
Q  241 aaagaaaataatactcactttaactgaattattactggtcctgtttttacctgtgagaaaatgggtagggtagggtctatactctacaacacttgttttt 340  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47581307 aaagaaaataatattcactttaactgaattattactggtcctgttttttcctgtgagaaaatgggtagggtagggtctatactctacaacacttgttttt 47581406  T
Q  341 ctgttggttctttgaatgaacatgacaatgtggttattttgaacatgaaaatcataaacgcagnnnnnnngaagattataaacaactttttgttaaattc 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||    
T  47581407 ctgttggttctttgaatgaacatgacaatgtggttattttgaacatgaaaatcataaacacagaaaaaaagaagattataaacaactttttgttaaattc 47581506  T
Q  441 agatagtatacacgtttgagccatgcaagataagaggcagtagaagattacaatttaatttaattttttattttnnnnnnngcatgtaaaatttaatgtt 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||    
T  47581507 agatagtatacacgtttgagccatgcaagataagaggcagtagaagattacaatttaatttaattttttattttaaaaaaagcatgtaaaattaaatgtt 47581606  T
Q  541 tcctagttgtgtgtgtagaattggtgaactttccaattaactaatgtactagtnnnnnnnnnctgattcattcaatcaaatggtgaaagaaagaagnnnn 640  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||        
T  47581607 tcctagttgtctgtgtagaattggtgaactttccaattaactaatgtactagt-aaaaaaaactgattcattcaatcaaatggtgaaagaaagaagaaaa 47581705  T
Q  641 nnnngtagtattgtgttgcagagaagattcccttgttacttttcctttttatcattaatgatgat 705  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47581706 aaaagtagtattgtgttgcagagaagattcccttgttacttttcctttttatcattaatgatgat 47581770  T

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