View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_31 (Length: 388)
Name: NF3103_low_31
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 50109148 - 50108785
Alignment:
| Q |
10 |
catcatcactaattctatcaatgtctgtcaactacttgtcttctatgaaatcaacatcacaacatccgataagtttcttcataacaacataataaaactt |
109 |
Q |
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| T |
50109148 |
catcatcactaattctatcaatgtctgtcaactacttgtcttctatgaaatcaacatcacaacatctgataagtttcttcataacaacataataaaactt |
50109049 |
T |
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| Q |
110 |
gtaacgagccccatctaggtagtagccactaaacacacaattttgactctttacaggatgctttacatccaaaaacatgtaagtgatcataagaaacttt |
209 |
Q |
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| T |
50109048 |
gtaacgagctccatctaggtagtagccactaaacacacaattttgactctttacaggatgctttacatccaaaaacatgtaagggatcataagaaacttt |
50108949 |
T |
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| Q |
210 |
cttatctaaccaaatcattgttgacagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatct |
309 |
Q |
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| T |
50108948 |
cttatataaccaaatcatcgttggcagtagcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatct |
50108849 |
T |
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| Q |
310 |
tgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattat |
373 |
Q |
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| T |
50108848 |
tgaaatttttgttgttgataaagtagagactgaaatttttgggatagctaattatatatattat |
50108785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 28228603 - 28228738
Alignment:
| Q |
69 |
caacatccgataagtttcttcataacaacataataaaacttgtaacgagccccatctaggtagtagccactaaacacacaattttgactctttacaggat |
168 |
Q |
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| T |
28228603 |
caacatccgataagtttcttcatatcacaatcataaaacctgtaatcagctccatctaagtcatagcaaagaaacatacaatgttgactcttcaca-tat |
28228701 |
T |
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| Q |
169 |
gctttacatccaaaaacatgtaagtgatcataagaaa |
205 |
Q |
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| T |
28228702 |
gttttgcatccgaaaacacataagtggtcataagaaa |
28228738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
269 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
333 |
Q |
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| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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